BacMap

Definition	Nocardioides sp. JS614 chromosome, complete genome.
Accession	NC_008699
Length	4,985,871

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The map label for this gene is yhcH [H]

Identifier: 119715556

GI number: 119715556

Start: 1392486

End: 1393388

Strand: Direct

Name: yhcH [H]

Synonym: Noca_1320

Alternate gene names: 119715556

Gene position: 1392486-1393388 (Clockwise)

Preceding gene: 119715552

Following gene: 119715557

Centisome position: 27.93

GC content: 71.43

Gene sequence:

>903_bases
ATGATCACGGTCGAGGGACTCACCAGGAAGTACGGCTCGTTCACGGCCGTGGACGACGTGAGCTTCGTCTGCCAACCCGG
CCGGGTGACCGGCTTCCTCGGTCCCAACGGTGCCGGCAAGACGACCACGATGCGCGTGATGGTGGGCCTGACCCCACCCA
CTGCGGGCCGGGTGACCATCGGTGGACACCTCTACAACGACATCCCCAACCCGGGCCGGCACGTCGGCGTCCTCCTCGAC
GCCTCCGCCCAGCACGCCGGCCGGACCGGGCGCGAGATCCTCGAGCTCGGCGCGCGGACGATGGGCCTCCCCGCCACGCG
CATCGACGAGATGCTCGAGCTGGTCTCGCTCACGCCCGCGGAGGCCAAGCGGCGGCTGCGCAACTACTCCCTCGGCATGA
AGCAGCGCCTCGGCATCGCGCACGCCCTGCTCGGCGACCCGTCGGTGCTGATCCTGGACGAGCCCGCCAACGGGCTCGAC
CCGGCCGGCATCCGCTGGATGCGCGGCCTCCTCAAGGGGTACGCCGAGCGTGGCGGCACGGTCCTGCTCTCGAGCCACCT
CCTCAACGAGGTGGAGCTGATCGCCGATGAGATGATCCTCATCGGCCACGGCCGGATCGTGGCCCAGGGTGACAAGAAGT
CGCTGCTCGCCGGCGCCCACGGGGTCGCGACGACGTTCGTCACCGCTCTCGACAACGAGGCGCTCGCCGCCGCCCTGAAG
GCCCGGGGTCTCACCGCGGCCAGCGCGGGCGAGGGGCTGCGGGTGGAGGCCGAACCGGTCGAGGTCGGCCGGACCGCGGC
CGAGAAGGCCATCGTGCTCACCGACCTGCGGGCGGCCGAGGGCGGGCTGGAGGACCTGTTCCTCGAGCTCACGTCCGATA
CCCAGCGCGAGGTCCTGTCGTGA

Upstream 100 bases:

>100_bases
GGAGGCTGCCGGGGTCGGGAGCCGCCCCCTACTTTGGTCTCCGCCGCGCCATCCGCGTGGCCGATGCGGGGCCGCCCGCC
GTTCCGGCAGGGTGGGAGCC

Downstream 100 bases:

>100_bases
GCGCCACGGCCCCGTCGCCCGGCCTCGGGCACGCCCTCGACCTGTCCTCGACCAGCCCCACACCGTTCGGCCGGCTGGCG
CGCGTCGAGCTGCGCAAGGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MITVEGLTRKYGSFTAVDDVSFVCQPGRVTGFLGPNGAGKTTTMRVMVGLTPPTAGRVTIGGHLYNDIPNPGRHVGVLLD
ASAQHAGRTGREILELGARTMGLPATRIDEMLELVSLTPAEAKRRLRNYSLGMKQRLGIAHALLGDPSVLILDEPANGLD
PAGIRWMRGLLKGYAERGGTVLLSSHLLNEVELIADEMILIGHGRIVAQGDKKSLLAGAHGVATTFVTALDNEALAAALK
ARGLTAASAGEGLRVEAEPVEVGRTAAEKAIVLTDLRAAEGGLEDLFLELTSDTQREVLS

Sequences:

>Translated_300_residues
MITVEGLTRKYGSFTAVDDVSFVCQPGRVTGFLGPNGAGKTTTMRVMVGLTPPTAGRVTIGGHLYNDIPNPGRHVGVLLD
ASAQHAGRTGREILELGARTMGLPATRIDEMLELVSLTPAEAKRRLRNYSLGMKQRLGIAHALLGDPSVLILDEPANGLD
PAGIRWMRGLLKGYAERGGTVLLSSHLLNEVELIADEMILIGHGRIVAQGDKKSLLAGAHGVATTFVTALDNEALAAALK
ARGLTAASAGEGLRVEAEPVEVGRTAAEKAIVLTDLRAAEGGLEDLFLELTSDTQREVLS
>Mature_300_residues
MITVEGLTRKYGSFTAVDDVSFVCQPGRVTGFLGPNGAGKTTTMRVMVGLTPPTAGRVTIGGHLYNDIPNPGRHVGVLLD
ASAQHAGRTGREILELGARTMGLPATRIDEMLELVSLTPAEAKRRLRNYSLGMKQRLGIAHALLGDPSVLILDEPANGLD
PAGIRWMRGLLKGYAERGGTVLLSSHLLNEVELIADEMILIGHGRIVAQGDKKSLLAGAHGVATTFVTALDNEALAAALK
ARGLTAASAGEGLRVEAEPVEVGRTAAEKAIVLTDLRAAEGGLEDLFLELTSDTQREVLS

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=216, Percent_Identity=32.8703703703704, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI150417984, Length=318, Percent_Identity=29.874213836478, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI47078218, Length=313, Percent_Identity=29.073482428115, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI116734710, Length=206, Percent_Identity=33.495145631068, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=31.9047619047619, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI45446740, Length=313, Percent_Identity=30.0319488817891, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI27477115, Length=303, Percent_Identity=30.3630363036304, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI153792144, Length=304, Percent_Identity=29.6052631578947, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI27881501, Length=329, Percent_Identity=28.2674772036474, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI30795238, Length=329, Percent_Identity=28.2674772036474, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI31657092, Length=213, Percent_Identity=31.924882629108, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI6005701, Length=316, Percent_Identity=29.4303797468354, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=32.6923076923077, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=29.2237442922374, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=29.2237442922374, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI9955968, Length=214, Percent_Identity=28.0373831775701, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI9955966, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI45243524, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI9955963, Length=215, Percent_Identity=28.3720930232558, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI48994943, Length=268, Percent_Identity=33.5820895522388, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=32.4444444444444, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786319, Length=304, Percent_Identity=30.9210526315789, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786563, Length=214, Percent_Identity=32.2429906542056, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=29.0909090909091, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=28.6343612334802, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=30.7359307359307, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=27.7272727272727, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=27.7533039647577, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=28.1385281385281, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787370, Length=281, Percent_Identity=25.2669039145907, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786398, Length=223, Percent_Identity=31.390134529148, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790525, Length=222, Percent_Identity=25.2252252252252, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=28.7610619469027, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786872, Length=225, Percent_Identity=28, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787712, Length=210, Percent_Identity=29.5238095238095, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=28.0542986425339, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790739, Length=233, Percent_Identity=27.8969957081545, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI48994997, Length=243, Percent_Identity=26.7489711934156, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789991, Length=224, Percent_Identity=26.3392857142857, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=24.6575342465753, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790190, Length=231, Percent_Identity=27.7056277056277, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87082268, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=25.9911894273128, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789891, Length=231, Percent_Identity=29.8701298701299, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786803, Length=223, Percent_Identity=27.3542600896861, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693107, Length=226, Percent_Identity=30.5309734513274, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789032, Length=276, Percent_Identity=27.8985507246377, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787547, Length=234, Percent_Identity=26.4957264957265, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789962, Length=240, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788210, Length=263, Percent_Identity=23.1939163498099, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787792, Length=204, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788506, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=237, Percent_Identity=27.0042194092827, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787500, Length=212, Percent_Identity=30.188679245283, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=167, Percent_Identity=25.748502994012, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789890, Length=225, Percent_Identity=28.4444444444444, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=231, Percent_Identity=25.974025974026, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788644, Length=237, Percent_Identity=24.4725738396624, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=31.1926605504587, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI115533608, Length=268, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=31.3364055299539, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=31.3364055299539, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=31.3364055299539, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17565586, Length=239, Percent_Identity=29.7071129707113, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI193202878, Length=186, Percent_Identity=29.5698924731183, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71992290, Length=221, Percent_Identity=25.7918552036199, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17539902, Length=209, Percent_Identity=29.6650717703349, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=230, Percent_Identity=27.8260869565217, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=211, Percent_Identity=27.9620853080569, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=30.2752293577982, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24666092, Length=210, Percent_Identity=31.9047619047619, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28574150, Length=215, Percent_Identity=31.6279069767442, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI116007328, Length=215, Percent_Identity=31.6279069767442, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI28573573, Length=219, Percent_Identity=29.6803652968037, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28573571, Length=219, Percent_Identity=29.6803652968037, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=28.8990825688073, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI221500365, Length=311, Percent_Identity=25.4019292604502, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007184, Length=311, Percent_Identity=25.4019292604502, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648314, Length=223, Percent_Identity=30.4932735426009, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24581191, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581189, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581193, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581195, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI85724864, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580555, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85816269, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580553, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582014, Length=142, Percent_Identity=35.9154929577465, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582012, Length=142, Percent_Identity=35.9154929577465, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24650855, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650853, Length=219, Percent_Identity=27.3972602739726, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574744, Length=201, Percent_Identity=27.8606965174129, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31597; Mature: 31597

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVEGLTRKYGSFTAVDDVSFVCQPGRVTGFLGPNGAGKTTTMRVMVGLTPPTAGRVTI
CEECCCHHHHCCCEEEECCCCEEECCCCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEE
GGHLYNDIPNPGRHVGVLLDASAQHAGRTGREILELGARTMGLPATRIDEMLELVSLTPA
CCEECCCCCCCCCEEEEEEECCCHHCCCHHHHHHHHCHHHCCCCHHHHHHHHHHHHCCHH
EAKRRLRNYSLGMKQRLGIAHALLGDPSVLILDEPANGLDPAGIRWMRGLLKGYAERGGT
HHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE
VLLSSHLLNEVELIADEMILIGHGRIVAQGDKKSLLAGAHGVATTFVTALDNEALAAALK
EEEHHHHHHHHHHHHHCEEEEECCEEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHH
ARGLTAASAGEGLRVEAEPVEVGRTAAEKAIVLTDLRAAEGGLEDLFLELTSDTQREVLS
HCCCEECCCCCCCEEECCHHHHCHHHHHCEEEEEECHHHCCCHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MITVEGLTRKYGSFTAVDDVSFVCQPGRVTGFLGPNGAGKTTTMRVMVGLTPPTAGRVTI
CEECCCHHHHCCCEEEECCCCEEECCCCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEE
GGHLYNDIPNPGRHVGVLLDASAQHAGRTGREILELGARTMGLPATRIDEMLELVSLTPA
CCEECCCCCCCCCEEEEEEECCCHHCCCHHHHHHHHCHHHCCCCHHHHHHHHHHHHCCHH
EAKRRLRNYSLGMKQRLGIAHALLGDPSVLILDEPANGLDPAGIRWMRGLLKGYAERGGT
HHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE
VLLSSHLLNEVELIADEMILIGHGRIVAQGDKKSLLAGAHGVATTFVTALDNEALAAALK
EEEHHHHHHHHHHHHHCEEEEECCEEEEECCCHHHHHCCCHHHHHHHHHHCCHHHHHHHH
ARGLTAASAGEGLRVEAEPVEVGRTAAEKAIVLTDLRAAEGGLEDLFLELTSDTQREVLS
HCCCEECCCCCCCEEECCHHHHCHHHHHCEEEEEECHHHCCCHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]