Click here to switch to the map view.

The map label for this gene is uidR [C]

Identifier: 119715523

GI number: 119715523

Start: 1361432

End: 1362136

Strand: Reverse

Name: uidR [C]

Synonym: Noca_1287

Alternate gene names: 119715523

Gene position: 1362136-1361432 (Counterclockwise)

Preceding gene: 119715529

Following gene: 119715516

Centisome position: 27.32

GC content: 71.06

Gene sequence:

>705_bases
ATGAGCAAGTCCTCGGTCTCCAAGCTCGTGCCGCGGGTGCCCGGCGTCCCGGTGCCGGGCGGCAGCCGTCGCCAGCAGTA
CTCCGCCTCCACGAAGCGGGCGCTGGTCGATGTCGCGGAGGAGCTGTTCACCGAGAACGGGTACGCCGCGACCTCGCTGG
ACGCGATCGTCGCCGGGGCCCGGGTCACCAAGGGCGCGCTCTACCACCACTACAGCGGCAAGCAGGCGCTGTTCGAGGCG
GTCTTCGAGCGGGTCGAGCAGGACGCCGCCCGCGCGATCCAGAAGGCCCTCAAGGGCCACCGCGACCCGTGGGAGAAGGC
GCAGGCGGGGCTCCGCGCGTTCCTGGCCGTGGTGCAGGAGGCGCGATACCGCCGGATCGTGATCCAGGAGGGGCCCTCGG
TCCTCGGCTACGAGCGCTACCGCGAGCAGGAGGAGCGCTCCACGTTCGCCAACGTGCTGGAGATCGTCCAGTCCGTGCTG
GCCGCCGGCAAGTGGGACCTCGACGACGCGCTGCAGCAGACCTTCGCGCGGATCTTCTTCGGCGCGATGTCCTCGGCCGG
GGAGTCCGTGTCGAGCGCACCCGACCCGATCCAGGCAGCCGCGAACGTGGAGACCGCGATCGGCTTCATCCTGGCCGGCT
TCCAGGCCCTGGCCGAGAGCGGTGTCGAGCTGCCGTCCGGCGAGGTCGTCGAGACGACCTCCTGA

Upstream 100 bases:

>100_bases
AGTACGTACCCACGGTACGTAACCGCACCGACGGTACGCAATCCGGCCCGCGGTGATGGTGATCACCCGTACCGACCGTC
GGTATTAGGCTGCCGGGACT

Downstream 100 bases:

>100_bases
GTCCGCCCCGAGCCGGGCCCACCGGGAGCCGCACCTACTTGGTGAAGGTGACGTTCCCGTTCGCCGCGGGGACCAGCTCG
ATCCAGGTGTGCCCCACCGG

Product: regulatory protein TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Transcriptional Regulatory Protein; TetR Family Regulatory Protein; Transcriptional Regulator Protein TetR Family; Transposon; TetR-Type Transcriptional Regulator; Transcriptional Regulator TetR

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSKSSVSKLVPRVPGVPVPGGSRRQQYSASTKRALVDVAEELFTENGYAATSLDAIVAGARVTKGALYHHYSGKQALFEA
VFERVEQDAARAIQKALKGHRDPWEKAQAGLRAFLAVVQEARYRRIVIQEGPSVLGYERYREQEERSTFANVLEIVQSVL
AAGKWDLDDALQQTFARIFFGAMSSAGESVSSAPDPIQAAANVETAIGFILAGFQALAESGVELPSGEVVETTS

Sequences:

>Translated_234_residues
MSKSSVSKLVPRVPGVPVPGGSRRQQYSASTKRALVDVAEELFTENGYAATSLDAIVAGARVTKGALYHHYSGKQALFEA
VFERVEQDAARAIQKALKGHRDPWEKAQAGLRAFLAVVQEARYRRIVIQEGPSVLGYERYREQEERSTFANVLEIVQSVL
AAGKWDLDDALQQTFARIFFGAMSSAGESVSSAPDPIQAAANVETAIGFILAGFQALAESGVELPSGEVVETTS
>Mature_233_residues
SKSSVSKLVPRVPGVPVPGGSRRQQYSASTKRALVDVAEELFTENGYAATSLDAIVAGARVTKGALYHHYSGKQALFEAV
FERVEQDAARAIQKALKGHRDPWEKAQAGLRAFLAVVQEARYRRIVIQEGPSVLGYERYREQEERSTFANVLEIVQSVLA
AGKWDLDDALQQTFARIFFGAMSSAGESVSSAPDPIQAAANVETAIGFILAGFQALAESGVELPSGEVVETTS

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25233; Mature: 25101

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSSVSKLVPRVPGVPVPGGSRRQQYSASTKRALVDVAEELFTENGYAATSLDAIVAGA
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RVTKGALYHHYSGKQALFEAVFERVEQDAARAIQKALKGHRDPWEKAQAGLRAFLAVVQE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ARYRRIVIQEGPSVLGYERYREQEERSTFANVLEIVQSVLAAGKWDLDDALQQTFARIFF
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
GAMSSAGESVSSAPDPIQAAANVETAIGFILAGFQALAESGVELPSGEVVETTS
HHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
>Mature Secondary Structure 
SKSSVSKLVPRVPGVPVPGGSRRQQYSASTKRALVDVAEELFTENGYAATSLDAIVAGA
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RVTKGALYHHYSGKQALFEAVFERVEQDAARAIQKALKGHRDPWEKAQAGLRAFLAVVQE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ARYRRIVIQEGPSVLGYERYREQEERSTFANVLEIVQSVLAAGKWDLDDALQQTFARIFF
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
GAMSSAGESVSSAPDPIQAAANVETAIGFILAGFQALAESGVELPSGEVVETTS
HHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA