| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715515
Identifier: 119715515
GI number: 119715515
Start: 1351987
End: 1353303
Strand: Reverse
Name: 119715515
Synonym: Noca_1279
Alternate gene names: NA
Gene position: 1353303-1351987 (Counterclockwise)
Preceding gene: 119715516
Following gene: 119715513
Centisome position: 27.14
GC content: 73.88
Gene sequence:
>1317_bases ATGTCTCGGGGACACGCATGGGCCGGTGGCGGCCTGGCGGTCACCGCCGCGACGGCACTCGTCGTCGCCGGCGCGCTCGG CGGCTGGCCGTGGTCCGGCGACGATGTCTACGGGGTCTACGGGCACTCGCTGGAGCGGTACGGCGACGAGCACGGCGAGC CGAACCGCTACGTGAACCTCGAGGACGGCGCGGCCCAGCTCTCGCTCGGGTCGCCGGACGGCCACCGGATCGTCGTGCAG TGGCGCGACCCGGACGGACACGGGTGGACCGAGCCCGAGACCGTGTGGACGGACCGGACGAACACCGCGATCGACAGCAC CGTGCGCTACGGCGGCGGCACGGTCGGCATCGTCGAGACCTACACCCCAGACACCAGCGACGACGACGACAGCTCCGACG TGCAGGTCGGCATCGTGTGCCGCGCCCTGGTCTGCGCGGCGACGCGGAAGCCGGGATTCGGCAGCGAGCCGCAGGTGACG CCGGACGGGAAGGTCGTCTACCTCGGCCAGGACGAGCAGGCGGTCAGCCTCTGGACCGAGGGCGCGGGCTTCGCGCGCGC ACGCTGGGCGGGGCACCCCGGCTTCGAGTACGGCGAGGTCTCGCCGTCTCGCCCGGTGCTGGCACCCGACGGGTCGCTGC GGGTGGTCTCCTCGCGGCCCGCCCGCGGGAGCTGCACGTTCGAGCTGCTGGCCTCCGAGCCGCGGGCGGCCGACCTCTCC GTGGTCGCCCGAAGCACCCGGCCGCTGCGCGGCGCGGCCGGGTCGGACTGTGCGTCGTACCTGGACACCTACAGTGCCGA CTGGGTGGCGGTGCACCCCGACGACCACCGCGCCCGCGACTTCTGGTTCGTCCGGCGCGGCGAGACGTGGACCACGACGC GCGAGGACCCCAGCGGCCTGGAGATCGTCGACACCGGCCGGGGCTGTTGCGACACGGCGGTCGCCGGCTTCGTGCACTGG AACGACGTCGCCTACGGCTCGCCGGACGGCCGGCGGATCCAGGTGCAGACGCACCTGCTCGGCGACGAGACGTGGAGCGC CCCGCTCCTGTTCGACGGCGCACCCGCGGGCTTCGCCTGCACCTGGCTCGAGGGCCGCGAGGTCGGGGACGGTTTCGTCG TGCTGATGACCTGCCACTCCGGTGAGGTCCGCGACGAGTTCCGCGGTGACGCGTACGCCGTCGCCGCCACTCCGGACCTG GCGCACTGGGAGTCGGCGTGGGCGACCGACGTCAGCGCCGACCCGGTGGTCGACGACGACCGGGTCGTGGTGGGCGACCT GTCGTGGACGCCGGACGGCGGCTTCGACCAGGGCTGA
Upstream 100 bases:
>100_bases ACGACGGCTCCTACCGGACCACCCACCACCCCAACGGCACCATCACCTACCACCGACGCACGTAGACCGACCGGCCCACC GATGCACGTAGGCTCCGCCC
Downstream 100 bases:
>100_bases CCCGGTCCCCCTCACGGCAAGGCCTCGGGCCATCACCGCTGCGTAAGGGCGATCCCGAGGCCTGCCGGCTACGTGCCTCC TTGAATACTCCGAACTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSRGHAWAGGGLAVTAATALVVAGALGGWPWSGDDVYGVYGHSLERYGDEHGEPNRYVNLEDGAAQLSLGSPDGHRIVVQ WRDPDGHGWTEPETVWTDRTNTAIDSTVRYGGGTVGIVETYTPDTSDDDDSSDVQVGIVCRALVCAATRKPGFGSEPQVT PDGKVVYLGQDEQAVSLWTEGAGFARARWAGHPGFEYGEVSPSRPVLAPDGSLRVVSSRPARGSCTFELLASEPRAADLS VVARSTRPLRGAAGSDCASYLDTYSADWVAVHPDDHRARDFWFVRRGETWTTTREDPSGLEIVDTGRGCCDTAVAGFVHW NDVAYGSPDGRRIQVQTHLLGDETWSAPLLFDGAPAGFACTWLEGREVGDGFVVLMTCHSGEVRDEFRGDAYAVAATPDL AHWESAWATDVSADPVVDDDRVVVGDLSWTPDGGFDQG
Sequences:
>Translated_438_residues MSRGHAWAGGGLAVTAATALVVAGALGGWPWSGDDVYGVYGHSLERYGDEHGEPNRYVNLEDGAAQLSLGSPDGHRIVVQ WRDPDGHGWTEPETVWTDRTNTAIDSTVRYGGGTVGIVETYTPDTSDDDDSSDVQVGIVCRALVCAATRKPGFGSEPQVT PDGKVVYLGQDEQAVSLWTEGAGFARARWAGHPGFEYGEVSPSRPVLAPDGSLRVVSSRPARGSCTFELLASEPRAADLS VVARSTRPLRGAAGSDCASYLDTYSADWVAVHPDDHRARDFWFVRRGETWTTTREDPSGLEIVDTGRGCCDTAVAGFVHW NDVAYGSPDGRRIQVQTHLLGDETWSAPLLFDGAPAGFACTWLEGREVGDGFVVLMTCHSGEVRDEFRGDAYAVAATPDL AHWESAWATDVSADPVVDDDRVVVGDLSWTPDGGFDQG >Mature_437_residues SRGHAWAGGGLAVTAATALVVAGALGGWPWSGDDVYGVYGHSLERYGDEHGEPNRYVNLEDGAAQLSLGSPDGHRIVVQW RDPDGHGWTEPETVWTDRTNTAIDSTVRYGGGTVGIVETYTPDTSDDDDSSDVQVGIVCRALVCAATRKPGFGSEPQVTP DGKVVYLGQDEQAVSLWTEGAGFARARWAGHPGFEYGEVSPSRPVLAPDGSLRVVSSRPARGSCTFELLASEPRAADLSV VARSTRPLRGAAGSDCASYLDTYSADWVAVHPDDHRARDFWFVRRGETWTTTREDPSGLEIVDTGRGCCDTAVAGFVHWN DVAYGSPDGRRIQVQTHLLGDETWSAPLLFDGAPAGFACTWLEGREVGDGFVVLMTCHSGEVRDEFRGDAYAVAATPDLA HWESAWATDVSADPVVDDDRVVVGDLSWTPDGGFDQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46892; Mature: 46761
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGHAWAGGGLAVTAATALVVAGALGGWPWSGDDVYGVYGHSLERYGDEHGEPNRYVNL CCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCEEEE EDGAAQLSLGSPDGHRIVVQWRDPDGHGWTEPETVWTDRTNTAIDSTVRYGGGTVGIVET CCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCHHHCEEEECCCEEEEEEE YTPDTSDDDDSSDVQVGIVCRALVCAATRKPGFGSEPQVTPDGKVVYLGQDEQAVSLWTE ECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC GAGFARARWAGHPGFEYGEVSPSRPVLAPDGSLRVVSSRPARGSCTFELLASEPRAADLS CCCCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCEE VVARSTRPLRGAAGSDCASYLDTYSADWVAVHPDDHRARDFWFVRRGETWTTTREDPSGL EEEECCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCEEECCCCCCCCC EIVDTGRGCCDTAVAGFVHWNDVAYGSPDGRRIQVQTHLLGDETWSAPLLFDGAPAGFAC EEEECCCCHHHHHHHCEEEECCEECCCCCCCEEEEEEEEECCCCCCCCEEECCCCCCEEE TWLEGREVGDGFVVLMTCHSGEVRDEFRGDAYAVAATPDLAHWESAWATDVSADPVVDDD EEECCCCCCCCEEEEEEECCCCCHHHHCCCEEEEEECCCHHHHCCHHCCCCCCCCCCCCC RVVVGDLSWTPDGGFDQG CEEEEECEECCCCCCCCC >Mature Secondary Structure SRGHAWAGGGLAVTAATALVVAGALGGWPWSGDDVYGVYGHSLERYGDEHGEPNRYVNL CCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCEEEE EDGAAQLSLGSPDGHRIVVQWRDPDGHGWTEPETVWTDRTNTAIDSTVRYGGGTVGIVET CCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCHHHCEEEECCCEEEEEEE YTPDTSDDDDSSDVQVGIVCRALVCAATRKPGFGSEPQVTPDGKVVYLGQDEQAVSLWTE ECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC GAGFARARWAGHPGFEYGEVSPSRPVLAPDGSLRVVSSRPARGSCTFELLASEPRAADLS CCCCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCEE VVARSTRPLRGAAGSDCASYLDTYSADWVAVHPDDHRARDFWFVRRGETWTTTREDPSGL EEEECCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCEEECCCCCCCCC EIVDTGRGCCDTAVAGFVHWNDVAYGSPDGRRIQVQTHLLGDETWSAPLLFDGAPAGFAC EEEECCCCHHHHHHHCEEEECCEECCCCCCCEEEEEEEEECCCCCCCCEEECCCCCCEEE TWLEGREVGDGFVVLMTCHSGEVRDEFRGDAYAVAATPDLAHWESAWATDVSADPVVDDD EEECCCCCCCCEEEEEEECCCCCHHHHCCCEEEEEECCCHHHHCCHHCCCCCCCCCCCCC RVVVGDLSWTPDGGFDQG CEEEEECEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA