| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715388
Identifier: 119715388
GI number: 119715388
Start: 1222197
End: 1223807
Strand: Reverse
Name: 119715388
Synonym: Noca_1150
Alternate gene names: NA
Gene position: 1223807-1222197 (Counterclockwise)
Preceding gene: 119715390
Following gene: 119715385
Centisome position: 24.55
GC content: 73.18
Gene sequence:
>1611_bases ATGTCAGTGGAGAGCTCGCCACCGTCCGGGCGCCGGCGCGGCCGGCCGCAGCGGCTCCCGGAGGATCCGCACGCGCTCAG TTCCGGCCTGGTCGGCTGCGACCAGCGGATCGCCTGGCTGGTGACCGTTGCCCGGGTGCTCGGGCCCGATCCCGATCTCG CTCGCCGTGACGGCTTCATCGCCGCGCTGCGCGACCGCGACATCCTGGTCGACGCCTCCCGGGTCTCGCGCTGGGAGTCC GGGCTGCAGCCGCTACCCAGCCGGGTGGCCGCGACGTACGAGTCGGTGCTCGGCCTGACTGAGGGCTCCTTGGTGTCGGT CGCCAGCGGCCTGCGCCGCAGCTTCGGCACCGGCCCGAGCCCGCGGGAGAGCCTCCTGGGCGACACCGAGATGTCCGACC CCGACCTGGACCGGCTGCTCGAGCTCGCCGAGACCGGCCGCGCGACCGGCGCTGACTGGCTCCATCTCACCGACCACTTC AACCGGTTCGAGCGGGTGTTCCTCCGCGAGGACGACTGGACCAGGCTCTGCCACCGGCTCGTGACGGAGCTGGGATCGGC GGTCGGCACTGCCTATGTACGCCGCTACGAGGCCGCAGCCGCCTTCATCCGCCACCCCAACGCGCAGCGGCACCTGATCC TTGCGGTTGGCAGGTTCGTCACCGATCCTGACACTCAGGTCGTTGCCCCCATCCTCAACCTCCTCGGCGAGGTGCCGGAC CCGGCGGCTGCAGCGCTGACGCTGCGAATGCTGTCGGCCGACAGCGAGAACAAGTACCTGCGCCGGGCGGCCTCGTCGGT GGCCGCGGTGAAGCTCGCGCGGGGGCACTTCGACGAAGCGGCGCTCCCGCGCCTGGAGTCGCACGTTCTCGGCGCGCTGC GCCGCGGCGAGTCCCTCGACGGCCGGCTGGACGCGTTCGACCTCGCCGTACGGCTGCCGGAGCAGTCGTGGGCACGAGTC GCGGGCGGGCTACGCACCCGGCGGGCGTACGGACTGGTGACGCAGGCCCGGATCGACGACGAGCTGGTCCCGGCTGCCCG GGCCGCCTCGCTCGTGGCGGAGCTCGCACCCGCGATCCAGGCCGACACGCCGTCCCACCAGGCCCAGGAGCCCGACCTGA TGCTGCGCCGCCTGCTCCGTGAGGCGCTGCTGCACTCACACAAGCGGCGCCGCCACCACGCGGCACTGTTGCTCGCCGCC TCGCCGTACGCACCCGCCACCGCGCGCCACTGCCTGCGGCTCGCCGCCGACGCCAACGACCTCCTCGCTGCACGTGCGTG GACCGTGTTGATGCGGGTCGGCAACAGCAGCCAGCGTGACGGCGTCGTGCACCGAGCGATCGTCGAGGAGCGCCCGACCG TACGGGCCCGCGCGCTCGTCAACGCCGGCCTCGGCGGAGAACTCACACCCGAGCAGAGCGCGACGATCGCGGGCGGGTAC GAGTCCGCGCGCAGTCTCGAGCGGCACGCGACGCTCTTTGCGCTCGGGATGGCCGGGGCGCCCGAGCTGGCGCGTCTCGC CGAGTCCGAGGACGCAGAGACCCAGCGCGGCGCGAAGTGGTGGCTGAGCCAGGGACCCGCCATCCATGACCGGGACGTCC TCCAGGGCTGA
Upstream 100 bases:
>100_bases GCGGATCGCGGTGTTGTTGTTGCAGGCGTGTCGGAAACCTGCAATAAATGTTCCTGGGTGGAAGGGACGTGCAGGCACGA CACCCGACGATCGGGGGATC
Downstream 100 bases:
>100_bases ACCGCGGCCCGAGCCCGAGGACGAGGACGGCACGGGCCCACGGTGGCGCTCACCGCGAACCCGTGCCGTCGGGGTGGTGC TAGACGATCAACGGATCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MSVESSPPSGRRRGRPQRLPEDPHALSSGLVGCDQRIAWLVTVARVLGPDPDLARRDGFIAALRDRDILVDASRVSRWES GLQPLPSRVAATYESVLGLTEGSLVSVASGLRRSFGTGPSPRESLLGDTEMSDPDLDRLLELAETGRATGADWLHLTDHF NRFERVFLREDDWTRLCHRLVTELGSAVGTAYVRRYEAAAAFIRHPNAQRHLILAVGRFVTDPDTQVVAPILNLLGEVPD PAAAALTLRMLSADSENKYLRRAASSVAAVKLARGHFDEAALPRLESHVLGALRRGESLDGRLDAFDLAVRLPEQSWARV AGGLRTRRAYGLVTQARIDDELVPAARAASLVAELAPAIQADTPSHQAQEPDLMLRRLLREALLHSHKRRRHHAALLLAA SPYAPATARHCLRLAADANDLLAARAWTVLMRVGNSSQRDGVVHRAIVEERPTVRARALVNAGLGGELTPEQSATIAGGY ESARSLERHATLFALGMAGAPELARLAESEDAETQRGAKWWLSQGPAIHDRDVLQG
Sequences:
>Translated_536_residues MSVESSPPSGRRRGRPQRLPEDPHALSSGLVGCDQRIAWLVTVARVLGPDPDLARRDGFIAALRDRDILVDASRVSRWES GLQPLPSRVAATYESVLGLTEGSLVSVASGLRRSFGTGPSPRESLLGDTEMSDPDLDRLLELAETGRATGADWLHLTDHF NRFERVFLREDDWTRLCHRLVTELGSAVGTAYVRRYEAAAAFIRHPNAQRHLILAVGRFVTDPDTQVVAPILNLLGEVPD PAAAALTLRMLSADSENKYLRRAASSVAAVKLARGHFDEAALPRLESHVLGALRRGESLDGRLDAFDLAVRLPEQSWARV AGGLRTRRAYGLVTQARIDDELVPAARAASLVAELAPAIQADTPSHQAQEPDLMLRRLLREALLHSHKRRRHHAALLLAA SPYAPATARHCLRLAADANDLLAARAWTVLMRVGNSSQRDGVVHRAIVEERPTVRARALVNAGLGGELTPEQSATIAGGY ESARSLERHATLFALGMAGAPELARLAESEDAETQRGAKWWLSQGPAIHDRDVLQG >Mature_535_residues SVESSPPSGRRRGRPQRLPEDPHALSSGLVGCDQRIAWLVTVARVLGPDPDLARRDGFIAALRDRDILVDASRVSRWESG LQPLPSRVAATYESVLGLTEGSLVSVASGLRRSFGTGPSPRESLLGDTEMSDPDLDRLLELAETGRATGADWLHLTDHFN RFERVFLREDDWTRLCHRLVTELGSAVGTAYVRRYEAAAAFIRHPNAQRHLILAVGRFVTDPDTQVVAPILNLLGEVPDP AAAALTLRMLSADSENKYLRRAASSVAAVKLARGHFDEAALPRLESHVLGALRRGESLDGRLDAFDLAVRLPEQSWARVA GGLRTRRAYGLVTQARIDDELVPAARAASLVAELAPAIQADTPSHQAQEPDLMLRRLLREALLHSHKRRRHHAALLLAAS PYAPATARHCLRLAADANDLLAARAWTVLMRVGNSSQRDGVVHRAIVEERPTVRARALVNAGLGGELTPEQSATIAGGYE SARSLERHATLFALGMAGAPELARLAESEDAETQRGAKWWLSQGPAIHDRDVLQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58347; Mature: 58216
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVESSPPSGRRRGRPQRLPEDPHALSSGLVGCDQRIAWLVTVARVLGPDPDLARRDGFI CCCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCE AALRDRDILVDASRVSRWESGLQPLPSRVAATYESVLGLTEGSLVSVASGLRRSFGTGPS EEECCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC PRESLLGDTEMSDPDLDRLLELAETGRATGADWLHLTDHFNRFERVFLREDDWTRLCHRL CHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH VTELGSAVGTAYVRRYEAAAAFIRHPNAQRHLILAVGRFVTDPDTQVVAPILNLLGEVPD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCC PAAAALTLRMLSADSENKYLRRAASSVAAVKLARGHFDEAALPRLESHVLGALRRGESLD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC GRLDAFDLAVRLPEQSWARVAGGLRTRRAYGLVTQARIDDELVPAARAASLVAELAPAIQ CCCHHHHHHEECCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC ADTPSHQAQEPDLMLRRLLREALLHSHKRRRHHAALLLAASPYAPATARHCLRLAADAND CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCHH LLAARAWTVLMRVGNSSQRDGVVHRAIVEERPTVRARALVNAGLGGELTPEQSATIAGGY HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCH ESARSLERHATLFALGMAGAPELARLAESEDAETQRGAKWWLSQGPAIHDRDVLQG HHHHHHHHHHHHHEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCC >Mature Secondary Structure SVESSPPSGRRRGRPQRLPEDPHALSSGLVGCDQRIAWLVTVARVLGPDPDLARRDGFI CCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCE AALRDRDILVDASRVSRWESGLQPLPSRVAATYESVLGLTEGSLVSVASGLRRSFGTGPS EEECCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC PRESLLGDTEMSDPDLDRLLELAETGRATGADWLHLTDHFNRFERVFLREDDWTRLCHRL CHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH VTELGSAVGTAYVRRYEAAAAFIRHPNAQRHLILAVGRFVTDPDTQVVAPILNLLGEVPD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCC PAAAALTLRMLSADSENKYLRRAASSVAAVKLARGHFDEAALPRLESHVLGALRRGESLD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC GRLDAFDLAVRLPEQSWARVAGGLRTRRAYGLVTQARIDDELVPAARAASLVAELAPAIQ CCCHHHHHHEECCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC ADTPSHQAQEPDLMLRRLLREALLHSHKRRRHHAALLLAASPYAPATARHCLRLAADAND CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCHH LLAARAWTVLMRVGNSSQRDGVVHRAIVEERPTVRARALVNAGLGGELTPEQSATIAGGY HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCH ESARSLERHATLFALGMAGAPELARLAESEDAETQRGAKWWLSQGPAIHDRDVLQG HHHHHHHHHHHHHEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA