| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715385
Identifier: 119715385
GI number: 119715385
Start: 1216621
End: 1218084
Strand: Reverse
Name: 119715385
Synonym: Noca_1147
Alternate gene names: NA
Gene position: 1218084-1216621 (Counterclockwise)
Preceding gene: 119715388
Following gene: 119715384
Centisome position: 24.43
GC content: 68.99
Gene sequence:
>1464_bases ATGACACAGATCACACCGGCGACTTTTCATCTCTCGCCGTCCGTAACCGAGACAGTGTGCGGAACCGACACAGAACGGCC CGGGGAACTCTCGGTCCTACCGAGAGAGATGAGCCGCACCGCGATGGAGACCCGCCGGGCCGTCCGCACCCTTGTCACCG CCCTCGCCGCCCTCGGCGTCGCCGCCCTCCTGGCAGCAGGCGTCACCCCGGGCGCGGATGCATCCCCGTCGACCGCGACA GGCGCGAGGACCTCGACCGATCGGCCCGTCCTCTACCCGCGGCCCGTCGAGCAGCCGCTCCCCTCGATCGGTGTGGCTTT GGAGCGTCCGGTCGTCCAGCCGGACTACCGGTTCCTCTCCTCCCCGGACTTCATGAACTCCGACATCGCCGACGTGAGCA AGCTGCGGACCTGGCACCGCGGCCTGCCGAACTCCTGGAACTCCTCCTACGCGGCGACTGTCGACACCATCCTCGACACC TTCGAGTCCGAGGCCCCAGAAGACGTGTTCGTGGCCGGCGACCTGGTGGAAGGGCACTGGGTGAGCGACGACGACCGCAC CGGGCTCTTCGGTCCGGCCCGCACCCACGCGCAGCGGAAAGCCGCGATCAGGCGGGCCGCCGACTTCTACTTCTCCGAGT GGCGCAAGCGCTTCGATCAGCGCGGGCTCCCGGTGTACGCCGCGGTCGGTGACCACGACATCGGCGACAACCCCTGGCGC GGCGGCGGCAACGCGGAGGAGAACAGGTTCAAGCGCGACAACGTCGAGCTCTTCAAGGCGTCCTTCTCCAGAAAGGTGAT CGCGCCCAACCGGGTGCCCGACCGGCCTCGCGGGCCAGCCCACGACACGGCCTACGCGACGTACGTCGACCCGGAGGTGC TGCTGGTCACCGTCGACGTGTTCGAGCACACCAAGCGCAACGTCGTGGCCCACCTCGACCGCGCGCAGCTGGCGTGGCTC GACCGGACCCTCGCGTCGGCCGAGCGGCGCGGCACCGACTGGATCGTGGTCCAGGGACACGTGCCGGTGCTCAAGCCGGT CCGGATCTACGGATCCTCGGCCATGTACTACCGCGGCGGCGCCGGGTCGGCGTTCTGGCGGACCATGGCCCGGCACCACG TCGACCTCTACCTCGACGGCGAGGTGCACGACATCAGCGTCCGCCGCCGCGACGGAATCACCCAGATCTCGCACGGAGGC ACCATCCAGATGGCTTCGGCCGGCGGCTACGGGTCGACGAACTACCTGCTCGGCGAGGTGTTCGGCGACACCATGTTCCT GCGCGACCACCGGTTCGCCCCGAAGATGATCGACTTCTCCAAACGGCTCTGGCAGGTCGGGCAGTCGCACCGACCCGTGG TTCGCAAGGAGGTCTGGGACCGGCCGCTCGCCGTCGGCCACCTGGTGCTCACCAGCGACAACCAGGTCCAGTACAGCGAC GGCGCGCTCATCCCGCTCAGCTGA
Upstream 100 bases:
>100_bases CGTCGTGTCGTCCTGACGGGTGACGGCGACCTGGCGATCGAACTCGGAGCTCACGCCAGGAGCCTAGGGAGCGCCGGCGC GCGGCCGCCGGCGGGTCGGC
Downstream 100 bases:
>100_bases CCGGGTCGCGGTGCGGCACGATGGCCGCATGACCGATCGCCGGCCGCACTGGGTCTACGAGCCGGGCGAGGAGCCCGACC CGCGGTTCACGCTCGCGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MTQITPATFHLSPSVTETVCGTDTERPGELSVLPREMSRTAMETRRAVRTLVTALAALGVAALLAAGVTPGADASPSTAT GARTSTDRPVLYPRPVEQPLPSIGVALERPVVQPDYRFLSSPDFMNSDIADVSKLRTWHRGLPNSWNSSYAATVDTILDT FESEAPEDVFVAGDLVEGHWVSDDDRTGLFGPARTHAQRKAAIRRAADFYFSEWRKRFDQRGLPVYAAVGDHDIGDNPWR GGGNAEENRFKRDNVELFKASFSRKVIAPNRVPDRPRGPAHDTAYATYVDPEVLLVTVDVFEHTKRNVVAHLDRAQLAWL DRTLASAERRGTDWIVVQGHVPVLKPVRIYGSSAMYYRGGAGSAFWRTMARHHVDLYLDGEVHDISVRRRDGITQISHGG TIQMASAGGYGSTNYLLGEVFGDTMFLRDHRFAPKMIDFSKRLWQVGQSHRPVVRKEVWDRPLAVGHLVLTSDNQVQYSD GALIPLS
Sequences:
>Translated_487_residues MTQITPATFHLSPSVTETVCGTDTERPGELSVLPREMSRTAMETRRAVRTLVTALAALGVAALLAAGVTPGADASPSTAT GARTSTDRPVLYPRPVEQPLPSIGVALERPVVQPDYRFLSSPDFMNSDIADVSKLRTWHRGLPNSWNSSYAATVDTILDT FESEAPEDVFVAGDLVEGHWVSDDDRTGLFGPARTHAQRKAAIRRAADFYFSEWRKRFDQRGLPVYAAVGDHDIGDNPWR GGGNAEENRFKRDNVELFKASFSRKVIAPNRVPDRPRGPAHDTAYATYVDPEVLLVTVDVFEHTKRNVVAHLDRAQLAWL DRTLASAERRGTDWIVVQGHVPVLKPVRIYGSSAMYYRGGAGSAFWRTMARHHVDLYLDGEVHDISVRRRDGITQISHGG TIQMASAGGYGSTNYLLGEVFGDTMFLRDHRFAPKMIDFSKRLWQVGQSHRPVVRKEVWDRPLAVGHLVLTSDNQVQYSD GALIPLS >Mature_486_residues TQITPATFHLSPSVTETVCGTDTERPGELSVLPREMSRTAMETRRAVRTLVTALAALGVAALLAAGVTPGADASPSTATG ARTSTDRPVLYPRPVEQPLPSIGVALERPVVQPDYRFLSSPDFMNSDIADVSKLRTWHRGLPNSWNSSYAATVDTILDTF ESEAPEDVFVAGDLVEGHWVSDDDRTGLFGPARTHAQRKAAIRRAADFYFSEWRKRFDQRGLPVYAAVGDHDIGDNPWRG GGNAEENRFKRDNVELFKASFSRKVIAPNRVPDRPRGPAHDTAYATYVDPEVLLVTVDVFEHTKRNVVAHLDRAQLAWLD RTLASAERRGTDWIVVQGHVPVLKPVRIYGSSAMYYRGGAGSAFWRTMARHHVDLYLDGEVHDISVRRRDGITQISHGGT IQMASAGGYGSTNYLLGEVFGDTMFLRDHRFAPKMIDFSKRLWQVGQSHRPVVRKEVWDRPLAVGHLVLTSDNQVQYSDG ALIPLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53969; Mature: 53838
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQITPATFHLSPSVTETVCGTDTERPGELSVLPREMSRTAMETRRAVRTLVTALAALGV CCCCCCEEEEECCCHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH AALLAAGVTPGADASPSTATGARTSTDRPVLYPRPVEQPLPSIGVALERPVVQPDYRFLS HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCHHHCC SPDFMNSDIADVSKLRTWHRGLPNSWNSSYAATVDTILDTFESEAPEDVFVAGDLVEGHW CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCE VSDDDRTGLFGPARTHAQRKAAIRRAADFYFSEWRKRFDQRGLPVYAAVGDHDIGDNPWR ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC GGGNAEENRFKRDNVELFKASFSRKVIAPNRVPDRPRGPAHDTAYATYVDPEVLLVTVDV CCCCCHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEECCEEEEEEEEH FEHTKRNVVAHLDRAQLAWLDRTLASAERRGTDWIVVQGHVPVLKPVRIYGSSAMYYRGG HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCEEEEECC AGSAFWRTMARHHVDLYLDGEVHDISVRRRDGITQISHGGTIQMASAGGYGSTNYLLGEV CCHHHHHHHHHHCEEEEECCCEEEEEEECCCCCCEECCCCEEEEECCCCCCCCHHHHHHH FGDTMFLRDHRFAPKMIDFSKRLWQVGQSHRPVVRKEVWDRPLAVGHLVLTSDNQVQYSD HCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEEECCCEEEECC GALIPLS CCEEECC >Mature Secondary Structure TQITPATFHLSPSVTETVCGTDTERPGELSVLPREMSRTAMETRRAVRTLVTALAALGV CCCCCEEEEECCCHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH AALLAAGVTPGADASPSTATGARTSTDRPVLYPRPVEQPLPSIGVALERPVVQPDYRFLS HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCHHHCC SPDFMNSDIADVSKLRTWHRGLPNSWNSSYAATVDTILDTFESEAPEDVFVAGDLVEGHW CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCE VSDDDRTGLFGPARTHAQRKAAIRRAADFYFSEWRKRFDQRGLPVYAAVGDHDIGDNPWR ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC GGGNAEENRFKRDNVELFKASFSRKVIAPNRVPDRPRGPAHDTAYATYVDPEVLLVTVDV CCCCCHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEECCEEEEEEEEH FEHTKRNVVAHLDRAQLAWLDRTLASAERRGTDWIVVQGHVPVLKPVRIYGSSAMYYRGG HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCEEEEECC AGSAFWRTMARHHVDLYLDGEVHDISVRRRDGITQISHGGTIQMASAGGYGSTNYLLGEV CCHHHHHHHHHHCEEEEECCCEEEEEEECCCCCCEECCCCEEEEECCCCCCCCHHHHHHH FGDTMFLRDHRFAPKMIDFSKRLWQVGQSHRPVVRKEVWDRPLAVGHLVLTSDNQVQYSD HCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEEECCCEEEECC GALIPLS CCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA