| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is livF [H]
Identifier: 119715100
GI number: 119715100
Start: 892969
End: 893658
Strand: Direct
Name: livF [H]
Synonym: Noca_0855
Alternate gene names: 119715100
Gene position: 892969-893658 (Clockwise)
Preceding gene: 119715099
Following gene: 119715101
Centisome position: 17.91
GC content: 74.64
Gene sequence:
>690_bases ATGCTTGAGGTCGAGAACCTGAGGGCGACATACGGCGCGGTCCAGGCCGTCCGCGGCGCCAGCTTCCGCGTGGCCGCCGG GGAGGTGCTGGCCGTCGTCGGCCCCAACGGCGCCGGCAAGTCCACGCTGGCCAATGCCATCGCCGGCCTGCACCGGTCAC GTACCGGGCGAGTGCTGGTCGCCGGTCACGACCTCGGGAGGCCGCGCGCCACCGCGACCGTCCGGGCCGGCGTCGCCCTG GTGCCCCAGGGGCGCCGGGTGTTCGGCAGCTGCACCGTCGCCGAGCACGTCCGCCTCGTGGGCGCCCACGCGGCGCCCGG CGCGGTGTCACTGGGGGAGCTGCTGACCCTGTTCCCCAAGCTCAGCGACCGGTCCGCGGTGCGCGCCCGCCTGCTCAGCG GTGGTGAGCAGCAGATGCTCGCCATCACCCGCGCGGTCCTCCTCGGCTCACGAGCCGTCGTGCTCGACGAGCCGACGGAG GGGCTGGCGCCCAGCATCGTCGCGGCCGTCGCCGAGCTGGTGCGGCTGCTCAAGGAACGCGGGGTCGCCGTGGTGCTCAT GGAGCAGGCTGGGCCGTTTCCCCACCAGCTGGCCGACCGAGTGGCCACGATGGACCGGGGGCTGCTGTCGCTCGCGCGTG CGGTGCCGCCCGGCGCCGCGCTCGCCGGAGATGAAGGAGAAGCGTCATGA
Upstream 100 bases:
>100_bases GTGACCCTGCTCAACCTCGGCGAGGTCGTCGCCGAGGGCAGCCCCGAGGACGTACGCGCGATGCCGATCATGTCCGAGAT CTACCTGGGGGTGGACGACC
Downstream 100 bases:
>100_bases CCGGAGCGCTGGGGGTCCAGATCACCCCGTGGAGCGGCTCGCGCGAGCTGGTAGCCCTCGGCCAGCGGCTGGCGCCGGTC GTCGACACCGTCTGGGTCCA
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 229; Mature: 229
Protein sequence:
>229_residues MLEVENLRATYGAVQAVRGASFRVAAGEVLAVVGPNGAGKSTLANAIAGLHRSRTGRVLVAGHDLGRPRATATVRAGVAL VPQGRRVFGSCTVAEHVRLVGAHAAPGAVSLGELLTLFPKLSDRSAVRARLLSGGEQQMLAITRAVLLGSRAVVLDEPTE GLAPSIVAAVAELVRLLKERGVAVVLMEQAGPFPHQLADRVATMDRGLLSLARAVPPGAALAGDEGEAS
Sequences:
>Translated_229_residues MLEVENLRATYGAVQAVRGASFRVAAGEVLAVVGPNGAGKSTLANAIAGLHRSRTGRVLVAGHDLGRPRATATVRAGVAL VPQGRRVFGSCTVAEHVRLVGAHAAPGAVSLGELLTLFPKLSDRSAVRARLLSGGEQQMLAITRAVLLGSRAVVLDEPTE GLAPSIVAAVAELVRLLKERGVAVVLMEQAGPFPHQLADRVATMDRGLLSLARAVPPGAALAGDEGEAS >Mature_229_residues MLEVENLRATYGAVQAVRGASFRVAAGEVLAVVGPNGAGKSTLANAIAGLHRSRTGRVLVAGHDLGRPRATATVRAGVAL VPQGRRVFGSCTVAEHVRLVGAHAAPGAVSLGELLTLFPKLSDRSAVRARLLSGGEQQMLAITRAVLLGSRAVVLDEPTE GLAPSIVAAVAELVRLLKERGVAVVLMEQAGPFPHQLADRVATMDRGLLSLARAVPPGAALAGDEGEAS
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=204, Percent_Identity=29.9019607843137, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=33.8308457711443, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI21536376, Length=215, Percent_Identity=29.7674418604651, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI27477115, Length=175, Percent_Identity=30.8571428571429, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27262624, Length=203, Percent_Identity=30.0492610837438, Blast_Score=78, Evalue=5e-15, Organism=Homo sapiens, GI27262626, Length=203, Percent_Identity=30.0492610837438, Blast_Score=78, Evalue=5e-15, Organism=Homo sapiens, GI27881501, Length=204, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI30795238, Length=204, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI153792144, Length=207, Percent_Identity=30.9178743961353, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI9955963, Length=195, Percent_Identity=32.3076923076923, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI47078218, Length=200, Percent_Identity=27.5, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI45446740, Length=200, Percent_Identity=27.5, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=29.7560975609756, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI105990541, Length=187, Percent_Identity=31.0160427807487, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI171184400, Length=233, Percent_Identity=30.0429184549356, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27436953, Length=201, Percent_Identity=28.8557213930348, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI6005701, Length=201, Percent_Identity=29.3532338308458, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI255708477, Length=156, Percent_Identity=31.4102564102564, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082268, Length=227, Percent_Identity=36.5638766519824, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=30.0469483568075, Blast_Score=97, Evalue=6e-22, Organism=Escherichia coli, GI1789991, Length=216, Percent_Identity=27.7777777777778, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786319, Length=190, Percent_Identity=34.2105263157895, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789672, Length=212, Percent_Identity=30.188679245283, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1787792, Length=204, Percent_Identity=31.3725490196078, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=30.5936073059361, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788225, Length=232, Percent_Identity=29.7413793103448, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788472, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=28.5046728971963, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=25.1121076233184, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI48994943, Length=212, Percent_Identity=31.1320754716981, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1786872, Length=213, Percent_Identity=30.5164319248826, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788210, Length=205, Percent_Identity=28.2926829268293, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1787105, Length=198, Percent_Identity=30.3030303030303, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1790525, Length=209, Percent_Identity=24.4019138755981, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=27.5109170305677, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=27.6785714285714, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1788897, Length=202, Percent_Identity=28.7128712871287, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787143, Length=187, Percent_Identity=34.2245989304813, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787500, Length=218, Percent_Identity=28.8990825688073, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=27.3584905660377, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787112, Length=219, Percent_Identity=31.5068493150685, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789873, Length=192, Percent_Identity=29.6875, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87081834, Length=190, Percent_Identity=32.6315789473684, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=22.6851851851852, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI87081782, Length=233, Percent_Identity=27.0386266094421, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=28.5046728971963, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1787370, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1789962, Length=206, Percent_Identity=29.126213592233, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787712, Length=224, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790544, Length=230, Percent_Identity=27.3913043478261, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI48994997, Length=218, Percent_Identity=30.2752293577982, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789593, Length=213, Percent_Identity=25.3521126760563, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1786563, Length=195, Percent_Identity=29.7435897435897, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786253, Length=192, Percent_Identity=30.7291666666667, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17510237, Length=217, Percent_Identity=32.7188940092166, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI71983523, Length=204, Percent_Identity=32.843137254902, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71983516, Length=204, Percent_Identity=32.843137254902, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71983510, Length=204, Percent_Identity=32.843137254902, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17565586, Length=220, Percent_Identity=29.0909090909091, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI115534520, Length=224, Percent_Identity=30.8035714285714, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71992285, Length=223, Percent_Identity=29.1479820627803, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71988343, Length=180, Percent_Identity=30.5555555555556, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115533608, Length=197, Percent_Identity=27.4111675126904, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193202349, Length=157, Percent_Identity=29.9363057324841, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17543740, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193208177, Length=203, Percent_Identity=30.0492610837438, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17541710, Length=218, Percent_Identity=25.6880733944954, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193209708, Length=156, Percent_Identity=30.1282051282051, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25146777, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71984940, Length=200, Percent_Identity=24.5, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=167, Percent_Identity=30.5389221556886, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI221512771, Length=213, Percent_Identity=29.1079812206573, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=29.5454545454545, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI24648314, Length=211, Percent_Identity=28.436018957346, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI21357907, Length=218, Percent_Identity=28.4403669724771, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=27.0642201834862, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI85724864, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580555, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI85816269, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580553, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24581387, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581383, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581385, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23445; Mature: 23445
Theoretical pI: Translated: 11.17; Mature: 11.17
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEVENLRATYGAVQAVRGASFRVAAGEVLAVVGPNGAGKSTLANAIAGLHRSRTGRVLV CCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE AGHDLGRPRATATVRAGVALVPQGRRVFGSCTVAEHVRLVGAHAAPGAVSLGELLTLFPK EECCCCCCCCHHEECCCEEECCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC LSDRSAVRARLLSGGEQQMLAITRAVLLGSRAVVLDEPTEGLAPSIVAAVAELVRLLKER CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC GVAVVLMEQAGPFPHQLADRVATMDRGLLSLARAVPPGAALAGDEGEAS CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC >Mature Secondary Structure MLEVENLRATYGAVQAVRGASFRVAAGEVLAVVGPNGAGKSTLANAIAGLHRSRTGRVLV CCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE AGHDLGRPRATATVRAGVALVPQGRRVFGSCTVAEHVRLVGAHAAPGAVSLGELLTLFPK EECCCCCCCCHHEECCCEEECCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC LSDRSAVRARLLSGGEQQMLAITRAVLLGSRAVVLDEPTEGLAPSIVAAVAELVRLLKER CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC GVAVVLMEQAGPFPHQLADRVATMDRGLLSLARAVPPGAALAGDEGEAS CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]