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The map label for this gene is lytR [H]

Identifier: 119715031

GI number: 119715031

Start: 827499

End: 828701

Strand: Direct

Name: lytR [H]

Synonym: Noca_0784

Alternate gene names: 119715031

Gene position: 827499-828701 (Clockwise)

Preceding gene: 119715030

Following gene: 119715035

Centisome position: 16.6

GC content: 69.33

Gene sequence:

>1203_bases
ATGTCCGACGCCGTGCCCGAGCACGCCCAGCCGGATCCGGGCGCGCCCAAGCGGCGGGGCAAGGCCCGCAAGCGTCACAC
GGTCGGGAAGGTGCTGCTCGCCACGACGCTGGTGCTGGTCATGGCGACCGGCCTGGGCACGGTCTGGCTCTACCGCCACC
TCAACGGCAACCTCAGCGTCCTCGACCCGACCGCCCAGCTGTCGAACCGGCCGGACAAGGTCAAGGTCGAGGGCCCCAAG
GAGCCGCTCAACATCCTGGTGATGGGCAGCGACAGTCGCGACTGCGCTGGCTGCAACATCGACAACCTCACCGGTGGCGG
CCAGCGCTCGGACACCACGATCCTGTTCCACCTCTCGGCGGACCGGGAGCGCGCCTACGGCGTCAGCATCCCGCGCGACT
CGATGGTCGACCGGCCGGACTGCGAGGCCGAGGACGGCAAGACGATCCCGGGCGCCGACAACGTGATGTGGAACGAGGCG
TTCGCGCTCGGCGGGCCCGCCTGCACGATCCAGCAGTTCGAGCAGCTCACCGGCGTGCGCCTCGACCACTTCGTCGTCGT
GAACTTCGAGGGCTTCCAGGGCATGGTCGACGCGATCGGAGGGGTCGAGGTGTGCATCCCCGAGCCGATCGTGGACCCCG
CCCACGGCATCAACATCGCCGCTGGCACCCGCAAGATCAAGGGCAAGGAGGCCCTCAACTACGTCCGCGAGCGGTACGTC
GTCGGCAACGGCTCGGACATCGGCCGGATGAAGCGCCAGCAGGCGTTCATCGGCTCGATGGCCCACCAGGTCGTCACCGC
CGGCACGCTCGCCCGGCCCGACCACCTGGTCGGCTTCCTCAACGCCGCGACCCAGTCGCTGACCGTCGACCCCGGCCTGG
AGAACGTGTGGAAGATCGCCAAGCTCGGCGTCGAGTTCAAGGGCATCGGCTTGGACAACATCCAGTTCATCACGATCCCG
AACATCCCCGACCCGGCCGACCCCAACCGCCTCGTCTGGCAGGAGCCGCAGGCCGACCAGGTCTGGCAGAAGCTCGCCCG
CGACGAGCCGCTGACCAAGAAGCTCAGCGAGGGCGTGATCAGCGCCGGCAACCTGCCCGGTTCGGGCTCCACCTCGGATT
CGGGCTCGGGTTCCGGCTCGGGTTCCGGCTCCACGAGCGAGGCCGAGAAGCAGGCGCTCGCGGACGCGGGGCTCTGCACG
TGA

Upstream 100 bases:

>100_bases
CGGGAGTGGCCCCATTTTGGGATGGAGCACCGCTCACAGGGACACTTAAGGTTCGCGACCTACGCTCACCGAGCCCCCGA
CCCGCGATCCGAGGTTGTCC

Downstream 100 bases:

>100_bases
CCCGGCCGCGCTCGGAGGAGTCGGACTGGGAGCGGCGCCGGCGCCGCGCCGAGGTCTTCGGCGAGGCGCTGCCCGAGACC
ACCAAGGACGAGCGCGACGA

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSDAVPEHAQPDPGAPKRRGKARKRHTVGKVLLATTLVLVMATGLGTVWLYRHLNGNLSVLDPTAQLSNRPDKVKVEGPK
EPLNILVMGSDSRDCAGCNIDNLTGGGQRSDTTILFHLSADRERAYGVSIPRDSMVDRPDCEAEDGKTIPGADNVMWNEA
FALGGPACTIQQFEQLTGVRLDHFVVVNFEGFQGMVDAIGGVEVCIPEPIVDPAHGINIAAGTRKIKGKEALNYVRERYV
VGNGSDIGRMKRQQAFIGSMAHQVVTAGTLARPDHLVGFLNAATQSLTVDPGLENVWKIAKLGVEFKGIGLDNIQFITIP
NIPDPADPNRLVWQEPQADQVWQKLARDEPLTKKLSEGVISAGNLPGSGSTSDSGSGSGSGSGSTSEAEKQALADAGLCT

Sequences:

>Translated_400_residues
MSDAVPEHAQPDPGAPKRRGKARKRHTVGKVLLATTLVLVMATGLGTVWLYRHLNGNLSVLDPTAQLSNRPDKVKVEGPK
EPLNILVMGSDSRDCAGCNIDNLTGGGQRSDTTILFHLSADRERAYGVSIPRDSMVDRPDCEAEDGKTIPGADNVMWNEA
FALGGPACTIQQFEQLTGVRLDHFVVVNFEGFQGMVDAIGGVEVCIPEPIVDPAHGINIAAGTRKIKGKEALNYVRERYV
VGNGSDIGRMKRQQAFIGSMAHQVVTAGTLARPDHLVGFLNAATQSLTVDPGLENVWKIAKLGVEFKGIGLDNIQFITIP
NIPDPADPNRLVWQEPQADQVWQKLARDEPLTKKLSEGVISAGNLPGSGSTSDSGSGSGSGSGSTSEAEKQALADAGLCT
>Mature_399_residues
SDAVPEHAQPDPGAPKRRGKARKRHTVGKVLLATTLVLVMATGLGTVWLYRHLNGNLSVLDPTAQLSNRPDKVKVEGPKE
PLNILVMGSDSRDCAGCNIDNLTGGGQRSDTTILFHLSADRERAYGVSIPRDSMVDRPDCEAEDGKTIPGADNVMWNEAF
ALGGPACTIQQFEQLTGVRLDHFVVVNFEGFQGMVDAIGGVEVCIPEPIVDPAHGINIAAGTRKIKGKEALNYVRERYVV
GNGSDIGRMKRQQAFIGSMAHQVVTAGTLARPDHLVGFLNAATQSLTVDPGLENVWKIAKLGVEFKGIGLDNIQFITIPN
IPDPADPNRLVWQEPQADQVWQKLARDEPLTKKLSEGVISAGNLPGSGSTSDSGSGSGSGSGSTSEAEKQALADAGLCT

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 42559; Mature: 42427

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00301 EFACTOR_GTP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAVPEHAQPDPGAPKRRGKARKRHTVGKVLLATTLVLVMATGLGTVWLYRHLNGNLSV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCEEE
LDPTAQLSNRPDKVKVEGPKEPLNILVMGSDSRDCAGCNIDNLTGGGQRSDTTILFHLSA
ECCHHHHCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
DRERAYGVSIPRDSMVDRPDCEAEDGKTIPGADNVMWNEAFALGGPACTIQQFEQLTGVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCHHHHHHHHHHCCE
LDHFVVVNFEGFQGMVDAIGGVEVCIPEPIVDPAHGINIAAGTRKIKGKEALNYVRERYV
EEEEEEEEECCCHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHEE
VGNGSDIGRMKRQQAFIGSMAHQVVTAGTLARPDHLVGFLNAATQSLTVDPGLENVWKIA
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCHHHHHHHH
KLGVEFKGIGLDNIQFITIPNIPDPADPNRLVWQEPQADQVWQKLARDEPLTKKLSEGVI
HHCCEEECCCCCCEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHCCE
SAGNLPGSGSTSDSGSGSGSGSGSTSEAEKQALADAGLCT
ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDAVPEHAQPDPGAPKRRGKARKRHTVGKVLLATTLVLVMATGLGTVWLYRHLNGNLSV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCEEE
LDPTAQLSNRPDKVKVEGPKEPLNILVMGSDSRDCAGCNIDNLTGGGQRSDTTILFHLSA
ECCHHHHCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
DRERAYGVSIPRDSMVDRPDCEAEDGKTIPGADNVMWNEAFALGGPACTIQQFEQLTGVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCHHHHHHHHHHCCE
LDHFVVVNFEGFQGMVDAIGGVEVCIPEPIVDPAHGINIAAGTRKIKGKEALNYVRERYV
EEEEEEEEECCCHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHEE
VGNGSDIGRMKRQQAFIGSMAHQVVTAGTLARPDHLVGFLNAATQSLTVDPGLENVWKIA
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCHHHHHHHH
KLGVEFKGIGLDNIQFITIPNIPDPADPNRLVWQEPQADQVWQKLARDEPLTKKLSEGVI
HHCCEEECCCCCCEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHCCE
SAGNLPGSGSTSDSGSGSGSGSGSTSEAEKQALADAGLCT
ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]