| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715030
Identifier: 119715030
GI number: 119715030
Start: 826035
End: 827201
Strand: Direct
Name: 119715030
Synonym: Noca_0783
Alternate gene names: NA
Gene position: 826035-827201 (Clockwise)
Preceding gene: 119715027
Following gene: 119715031
Centisome position: 16.57
GC content: 75.49
Gene sequence:
>1167_bases ATGACTCGCGAGCACGACATCGTCCTGGTCGGCGCGACCGGCTTCACCGGCGGGCTGACCGCCGAGTACCTCCTGCGGCA CGCCCCCGCGGGTCTGCGGTGGGCGCTGGCCGGCCGCAACCGGGAGAAGCTGGAGGCGGTCCGCGACCGGCTCGCCGACA TCGATCCGGTGGCCGCCGACCTGCCGCTGCTGCACGCCGACACCACCGATCCGGGCGCGCTCGCGGACCTGGCGGCGGCC ACCCGGGTCGTGATCACCACGGTGGGGCCCTACCTCGAGCACGGCGGCCCGCTCGTGGCCGCCTGCGCCGAGGCCGGCAC CGACTACGTCGACCTCACCGGCGAGCCCGAGTTCGTCGACCGCACGTACGTCGAGCACCACGCCACCGCCCAGCGCACCG GCGCCCGGATCGTGCACGCGTGCGGGTTCGACTCGGTTCCGCACGACCTCGGCGCGCTCTACACCGTCCAGCAGCTCGCC GCGACCGGTCCGGTGCGGCTGCGCGGCGTGGTCCGCTCGGGCGCCACCTTCTCCGGCGGCACCTTCCACTCGGCGCTGGG CCAGTTCTCCCGCGCCCGGCAGATGCGCACCGCGATGCAGGAGCGCCGTCGGGCCGAGCCGCGTCCCGAGGGCCGCCGCT CGCGCGCGGTCTCCGGCAAGCCGCACCGCGACCCGCTGCTCGGCTACTGGCTGGTGCCGCTCCCCACGATCGACCCGTTC GTCGTGGCCCGCAGCGGGGCCGCGCTGGCGGCGTACGGCCCGGACTTCTCCTACTCCCACTACGCCGGCACCAAGACGCT GCGGTACGCCGCCGGCGGGGCCGCGGCCGCCGTCGCGGTGTTCGGCGCGGCCCAGGTCCCGCCGCTGCGACGCCTCCTGC TCGGCCGGATCCCCCAGGGCGAGGGTCCCGACGAGCGGCGCCGGTCGAAGTCGTGGTTCACCGTCGACTTCGTCGGCGAG GGCGACGGCCGCACCGTGCACACCCGCGTCTCCGGCGGCGACCCCGGCTACGACGAGACCGCGAAGATGCTCGCCGAGTC CGCACTCTGCCTCGCGCTCGACGACAACCCGCCCACGTCCGGTCAGGTGACCACCGCCCAGGCGATGGGGGACAACCTGC TCACCCGGCTCCAGGCGGCCGGGATCCGCTTCGAGACCCTCGACTAG
Upstream 100 bases:
>100_bases TGGCCGGGGGCTCGAAGTTGTTGAGCGGGCGGATGTTGCGGCACATGACCCCGAGGGTACGTCGGCAGGCGGCTCGCCAG CACTCTGCGAGCATGGCCCC
Downstream 100 bases:
>100_bases CTGCGAAGCCGGGCCGGCCGGGGATCGCGGGCAGGCGCACAGCGGGTGGGCGCCCCAGGCAGGAGTCGAACCTGCGACCT TTCGCTTAGGAGGCGGCTGC
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MTREHDIVLVGATGFTGGLTAEYLLRHAPAGLRWALAGRNREKLEAVRDRLADIDPVAADLPLLHADTTDPGALADLAAA TRVVITTVGPYLEHGGPLVAACAEAGTDYVDLTGEPEFVDRTYVEHHATAQRTGARIVHACGFDSVPHDLGALYTVQQLA ATGPVRLRGVVRSGATFSGGTFHSALGQFSRARQMRTAMQERRRAEPRPEGRRSRAVSGKPHRDPLLGYWLVPLPTIDPF VVARSGAALAAYGPDFSYSHYAGTKTLRYAAGGAAAAVAVFGAAQVPPLRRLLLGRIPQGEGPDERRRSKSWFTVDFVGE GDGRTVHTRVSGGDPGYDETAKMLAESALCLALDDNPPTSGQVTTAQAMGDNLLTRLQAAGIRFETLD
Sequences:
>Translated_388_residues MTREHDIVLVGATGFTGGLTAEYLLRHAPAGLRWALAGRNREKLEAVRDRLADIDPVAADLPLLHADTTDPGALADLAAA TRVVITTVGPYLEHGGPLVAACAEAGTDYVDLTGEPEFVDRTYVEHHATAQRTGARIVHACGFDSVPHDLGALYTVQQLA ATGPVRLRGVVRSGATFSGGTFHSALGQFSRARQMRTAMQERRRAEPRPEGRRSRAVSGKPHRDPLLGYWLVPLPTIDPF VVARSGAALAAYGPDFSYSHYAGTKTLRYAAGGAAAAVAVFGAAQVPPLRRLLLGRIPQGEGPDERRRSKSWFTVDFVGE GDGRTVHTRVSGGDPGYDETAKMLAESALCLALDDNPPTSGQVTTAQAMGDNLLTRLQAAGIRFETLD >Mature_387_residues TREHDIVLVGATGFTGGLTAEYLLRHAPAGLRWALAGRNREKLEAVRDRLADIDPVAADLPLLHADTTDPGALADLAAAT RVVITTVGPYLEHGGPLVAACAEAGTDYVDLTGEPEFVDRTYVEHHATAQRTGARIVHACGFDSVPHDLGALYTVQQLAA TGPVRLRGVVRSGATFSGGTFHSALGQFSRARQMRTAMQERRRAEPRPEGRRSRAVSGKPHRDPLLGYWLVPLPTIDPFV VARSGAALAAYGPDFSYSHYAGTKTLRYAAGGAAAAVAVFGAAQVPPLRRLLLGRIPQGEGPDERRRSKSWFTVDFVGEG DGRTVHTRVSGGDPGYDETAKMLAESALCLALDDNPPTSGQVTTAQAMGDNLLTRLQAAGIRFETLD
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the saccharopine dehydrogenase family. Enoyl reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI55770836, Length=429, Percent_Identity=27.7389277389277, Blast_Score=133, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17560066, Length=435, Percent_Identity=28.0459770114943, Blast_Score=124, Evalue=9e-29, Organism=Caenorhabditis elegans, GI32567112, Length=406, Percent_Identity=27.5862068965517, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71991033, Length=421, Percent_Identity=25.8907363420428, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644140, Length=439, Percent_Identity=29.8405466970387, Blast_Score=156, Evalue=2e-38, Organism=Drosophila melanogaster, GI24644142, Length=439, Percent_Identity=29.8405466970387, Blast_Score=156, Evalue=2e-38, Organism=Drosophila melanogaster, GI21356081, Length=439, Percent_Identity=29.8405466970387, Blast_Score=156, Evalue=2e-38, Organism=Drosophila melanogaster, GI24646278, Length=440, Percent_Identity=27.9545454545455, Blast_Score=139, Evalue=3e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: NA
Molecular weight: Translated: 41350; Mature: 41219
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTREHDIVLVGATGFTGGLTAEYLLRHAPAGLRWALAGRNREKLEAVRDRLADIDPVAAD CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCHHC LPLLHADTTDPGALADLAAATRVVITTVGPYLEHGGPLVAACAEAGTDYVDLTGEPEFVD CCEEECCCCCCHHHHHHHHHHEEEEEECCHHHHCCCCEEEHHHHCCCCEEEECCCCCHHH RTYVEHHATAQRTGARIVHACGFDSVPHDLGALYTVQQLAATGPVRLRGVVRSGATFSGG HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCC TFHSALGQFSRARQMRTAMQERRRAEPRPEGRRSRAVSGKPHRDPLLGYWLVPLPTIDPF HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE VVARSGAALAAYGPDFSYSHYAGTKTLRYAAGGAAAAVAVFGAAQVPPLRRLLLGRIPQG EEECCCCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCC EGPDERRRSKSWFTVDFVGEGDGRTVHTRVSGGDPGYDETAKMLAESALCLALDDNPPTS CCCHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCC GQVTTAQAMGDNLLTRLQAAGIRFETLD CCEEEHHHHHHHHHHHHHHCCCEEEECC >Mature Secondary Structure TREHDIVLVGATGFTGGLTAEYLLRHAPAGLRWALAGRNREKLEAVRDRLADIDPVAAD CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCHHC LPLLHADTTDPGALADLAAATRVVITTVGPYLEHGGPLVAACAEAGTDYVDLTGEPEFVD CCEEECCCCCCHHHHHHHHHHEEEEEECCHHHHCCCCEEEHHHHCCCCEEEECCCCCHHH RTYVEHHATAQRTGARIVHACGFDSVPHDLGALYTVQQLAATGPVRLRGVVRSGATFSGG HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCC TFHSALGQFSRARQMRTAMQERRRAEPRPEGRRSRAVSGKPHRDPLLGYWLVPLPTIDPF HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE VVARSGAALAAYGPDFSYSHYAGTKTLRYAAGGAAAAVAVFGAAQVPPLRRLLLGRIPQG EEECCCCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCC EGPDERRRSKSWFTVDFVGEGDGRTVHTRVSGGDPGYDETAKMLAESALCLALDDNPPTS CCCHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCC GQVTTAQAMGDNLLTRLQAAGIRFETLD CCEEEHHHHHHHHHHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]