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The map label for this gene is xylR [H]

Identifier: 119714913

GI number: 119714913

Start: 705814

End: 706992

Strand: Direct

Name: xylR [H]

Synonym: Noca_0665

Alternate gene names: 119714913

Gene position: 705814-706992 (Clockwise)

Preceding gene: 119714912

Following gene: 119714914

Centisome position: 14.16

GC content: 74.98

Gene sequence:

>1179_bases
TTGGTCGAGAACCGCGAGACGGCCGCGCCGGCCACCGCCGGGGAGCTGCTCGAGCTCGTGCGCACCGGACGGGCCAGCAC
CCGCTCCCAGCTGCGTGCCCTCACCGGGCTGTCGCGGACCGCCGTCACGGCGCGGGTCGGCTCGCTGACCTCCGCCGGGC
TCCTGCTGCTCGGCGAGGAGCTCGCCTCGACCGGCGGCCGGCCTCCGGGCGCCCTGGTCTTCAACAAGGACGCGGGCACC
GTCCTCGCGGCCGCGATCGGTCGGTCCCGGAGCCAGCTGGCGGTGCTCGACCTCGACGGCCAGGAGCTCTCGGCAGACTC
GCGCGACCACGAGGTCGGGGTCGGCCCGGACGAGCTGATGGCCGATGTCGTCGACCGGTTCCGAGGCCTGCTCGCGGGTG
TCGAGCCACCGGTCCTCGGCATCGGGCTCAGCCTGCCCGGCACCCTCGACCAGGCCCGAGGCGTGAGCATCGGCTCCCCG
GTCATGTCCGGGTGGGACGGGGTGCCGCTGGCGCCGTACTTCGCCGATCTCGCGCAGGCACCGCTCTTCGTGGGCAACGA
CGCCGACGTCTTGGCCCGCTCCGAGCTGCTGGGCGGTGCGGGTGACCTCGGCGACGTACTGGTCGTGAAGGCCTCCACCG
GACTCGGCCTCGGCATCATCGCCGGAGGCCGGGTGCTCAGCGGGCATCTCGGGGCCGCGGGCGAGATCGGGCACACCAAG
GTCGACGCCGCCGGCGAACTGCCCTGCCGCTGCGGCGCGGCCGGCTGCCTGGAGACGATCGCTGGCGGCTGGTCGCTGGT
GGCCAAGATGGCCGAAGGCGGGCATCCGGTCGGCCACGTGCGCGAGCTGGTCGCCCTCGCCCTCCAGGGCGACTCCGCCG
CCCGGGGCCTGCTGCGCGACAGCGGCCGCGAGCTCGGTGACCTGCTCGCCGTGGCGATCAACCTGCTCAACCCGGCCGCG
GTCGTCATCGGCGGCGACATGGGCGCGGCCTTCGACTTCTACCTCGCGGGGGTGCGCGAGAGCGTCTACCGCCGGGCCGC
GCCGCTGGCGACCCGCGACCTGCAGTTCCTGCCGGCCACCCACGGCGCCCGGGCCGGAGTCGTCGGCTGCGCGGCACTGG
CTCTCGACCACGTGCTGAGCCCGGTCGCCATCGACAGTCGGCTGGCCACCCAGGCCTGA

Upstream 100 bases:

>100_bases
GGCTCGCAGATCAACCCCCGGCCGGTTCGGGTCGATACACCCAAGGAATCGGTCTTTCTCGGGTCCAAGTACGGCGGTTT
ATGCTCAGCTCGTGACCCAG

Downstream 100 bases:

>100_bases
CCGCTACCGTCTGCTCCGTGACCCGAGTACACGCCTTCGGCGACGACGCCCTCGGCACCCTCGACGCGGTCGGGCTCGTC
GAGGCCATCCAGGAGGGCCG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MVENRETAAPATAGELLELVRTGRASTRSQLRALTGLSRTAVTARVGSLTSAGLLLLGEELASTGGRPPGALVFNKDAGT
VLAAAIGRSRSQLAVLDLDGQELSADSRDHEVGVGPDELMADVVDRFRGLLAGVEPPVLGIGLSLPGTLDQARGVSIGSP
VMSGWDGVPLAPYFADLAQAPLFVGNDADVLARSELLGGAGDLGDVLVVKASTGLGLGIIAGGRVLSGHLGAAGEIGHTK
VDAAGELPCRCGAAGCLETIAGGWSLVAKMAEGGHPVGHVRELVALALQGDSAARGLLRDSGRELGDLLAVAINLLNPAA
VVIGGDMGAAFDFYLAGVRESVYRRAAPLATRDLQFLPATHGARAGVVGCAALALDHVLSPVAIDSRLATQA

Sequences:

>Translated_392_residues
MVENRETAAPATAGELLELVRTGRASTRSQLRALTGLSRTAVTARVGSLTSAGLLLLGEELASTGGRPPGALVFNKDAGT
VLAAAIGRSRSQLAVLDLDGQELSADSRDHEVGVGPDELMADVVDRFRGLLAGVEPPVLGIGLSLPGTLDQARGVSIGSP
VMSGWDGVPLAPYFADLAQAPLFVGNDADVLARSELLGGAGDLGDVLVVKASTGLGLGIIAGGRVLSGHLGAAGEIGHTK
VDAAGELPCRCGAAGCLETIAGGWSLVAKMAEGGHPVGHVRELVALALQGDSAARGLLRDSGRELGDLLAVAINLLNPAA
VVIGGDMGAAFDFYLAGVRESVYRRAAPLATRDLQFLPATHGARAGVVGCAALALDHVLSPVAIDSRLATQA
>Mature_392_residues
MVENRETAAPATAGELLELVRTGRASTRSQLRALTGLSRTAVTARVGSLTSAGLLLLGEELASTGGRPPGALVFNKDAGT
VLAAAIGRSRSQLAVLDLDGQELSADSRDHEVGVGPDELMADVVDRFRGLLAGVEPPVLGIGLSLPGTLDQARGVSIGSP
VMSGWDGVPLAPYFADLAQAPLFVGNDADVLARSELLGGAGDLGDVLVVKASTGLGLGIIAGGRVLSGHLGAAGEIGHTK
VDAAGELPCRCGAAGCLETIAGGWSLVAKMAEGGHPVGHVRELVALALQGDSAARGLLRDSGRELGDLLAVAINLLNPAA
VVIGGDMGAAFDFYLAGVRESVYRRAAPLATRDLQFLPATHGARAGVVGCAALALDHVLSPVAIDSRLATQA

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=342, Percent_Identity=28.0701754385965, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787878, Length=383, Percent_Identity=27.4151436031332, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87081733, Length=247, Percent_Identity=29.5546558704453, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082230, Length=268, Percent_Identity=29.4776119402985, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790522, Length=317, Percent_Identity=23.6593059936909, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 39518; Mature: 39518

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVENRETAAPATAGELLELVRTGRASTRSQLRALTGLSRTAVTARVGSLTSAGLLLLGEE
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCHH
LASTGGRPPGALVFNKDAGTVLAAAIGRSRSQLAVLDLDGQELSADSRDHEVGVGPDELM
HHHCCCCCCCEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
ADVVDRFRGLLAGVEPPVLGIGLSLPGTLDQARGVSIGSPVMSGWDGVPLAPYFADLAQA
HHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHC
PLFVGNDADVLARSELLGGAGDLGDVLVVKASTGLGLGIIAGGRVLSGHLGAAGEIGHTK
CEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCE
VDAAGELPCRCGAAGCLETIAGGWSLVAKMAEGGHPVGHVRELVALALQGDSAARGLLRD
ECCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
SGRELGDLLAVAINLLNPAAVVIGGDMGAAFDFYLAGVRESVYRRAAPLATRDLQFLPAT
CCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
HGARAGVVGCAALALDHVLSPVAIDSRLATQA
CCCCHHHHHHHHHHHHHHHCCHHHCCHHHCCC
>Mature Secondary Structure
MVENRETAAPATAGELLELVRTGRASTRSQLRALTGLSRTAVTARVGSLTSAGLLLLGEE
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCHH
LASTGGRPPGALVFNKDAGTVLAAAIGRSRSQLAVLDLDGQELSADSRDHEVGVGPDELM
HHHCCCCCCCEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
ADVVDRFRGLLAGVEPPVLGIGLSLPGTLDQARGVSIGSPVMSGWDGVPLAPYFADLAQA
HHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHC
PLFVGNDADVLARSELLGGAGDLGDVLVVKASTGLGLGIIAGGRVLSGHLGAAGEIGHTK
CEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCE
VDAAGELPCRCGAAGCLETIAGGWSLVAKMAEGGHPVGHVRELVALALQGDSAARGLLRD
ECCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
SGRELGDLLAVAINLLNPAAVVIGGDMGAAFDFYLAGVRESVYRRAAPLATRDLQFLPAT
CCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
HGARAGVVGCAALALDHVLSPVAIDSRLATQA
CCCCHHHHHHHHHHHHHHHCCHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]