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The map label for this gene is rarD [H]

Identifier: 119714799

GI number: 119714799

Start: 567946

End: 569427

Strand: Reverse

Name: rarD [H]

Synonym: Noca_0535

Alternate gene names: 119714799

Gene position: 569427-567946 (Counterclockwise)

Preceding gene: 119714800

Following gene: 119714782

Centisome position: 11.42

GC content: 70.51

Gene sequence:

>1482_bases
GTGCCCGAGGTCTCAGGAGCGCGTCGTGTAGGTCTTGTAGACGTGCGTCCAGGACTGGGCGTACCCGCCGTAGGCCCTGA
CGTAACCCCGCCAGTACCAGTTGCCGTGCTCGGGCGCGAGCACGCGGACCTGCCAGCGCTCCTTCGGCCCGTGCGTGGAC
ACCCGCTTGAACACCTTCCACTTGCACGTGGCCGACGAGCACTGCTTCTTCTGCACGACGACCGGGCCGTGCCCGGGATC
GACCCGGCCCTTGAAGTAGAGCTTGCCGTTCCGCTTCACGATCGAGTCGTGCAGGTCGCGGGTCGGCTGCTCGGTCCCCC
GACCGACCGGCGCACTCGCAATCGTCCGGGCGGCGGCGTCGGCCGCAGCGCTCGCCGCCTGGGCGGGTCCCGCGGCCGCG
GTCAGGCCGCCCACGCCCAGGGCGAGCGCGGCGGTCAGGGTCGTCAGGGTCTGACGCATCCGTGGGGTCTCCCTCCGAGA
GTCGCGGGCGCTCCTGATCGGCCCCGTGCCCGAAACCTGCCCCTGGGCCCTCAGGGCCAAACGCCTGCGACGCCCTCTTA
TGCTGTGCGGGTGCCGGAACCGCGTCGTGGGCTTGCGTTCGGGTTCGCGGCGTACGCCATGTGGGGAGCCTTCCCGCTCT
ACTGGCCGTTGCTGGAGCCCGCCGGGGCGACCGAGATCCTCGCACACCGCGTGCTCTGGTCCGCCCTCACGATGGGCCTC
CTCCTGCTGGTGCTGGCCCGGACGCCGCAGCTGCGCGCGGTGCTGCGCGACCGGCGCGTCCGGCTCCTGCTGACCATCGC
CGCCGCGGTGATCAGTGTGAACTGGGTGACCTACATCTGGGGCGTCAACAACGACCGGGTCGTCGAGACCTCCCTGGGAT
ACTTCATCAACCCGCTCGTGACCGTGCTGATGGGTGTCGTGGTCCTCCACGAGCGGCTGCGCCCGCTGCAATGGATGGCG
ATGGGGCTCGCGTCCGGAGCGGTCGTCGTCCTCGCTGTCGACTACGGGCGACTGCCATGGGTGGCCCTGATCCTGGCGTT
CTCGTTCGGCAGCTACGGCCTGTGCAAGAAGACCGCGAACGTCGGGGCGACCGAGAGCCTCGCGTTCGAGACCGCCGTGA
TCGCTCCGTTCGCCGCCGGCTACCTGGCCTGGCTGGGTTGGACCGGCGGGTCGAACTTCGCCAGCCACGGCGCGGGTCAC
GCGCTGCTGTTCGCCACGACCGGCGTCGTCACCGCCGTACCGCTGATCTGCTTCGGCGCGGCCGCGACCCGGGTGTCCAT
GGTGACCCTGGGCCTGCTGCAGTACCTCGCGCCGATCATCCAGTTCGCCCTCGGAGTGCTGTGGTTCCACGAGGACATGC
CTGCCGGCCGCTGGGTCGGGTTCGTCCTGGTCTGGATCGCCCTGGTGGTGTTCACCGTCGAGGCGGTCAACCACCGCCGC
CGCCAGCTGCGCCTCACCGTCGAGGCCACCACCGCGAGCTAG

Upstream 100 bases:

>100_bases
GACACCTGGACCGTCGTCTGACGGCGCGCCTCCCCGGCCACGGCGCCGGGCAGCACGCTGGTAGCACCAAGGGTCCCGCC
CGAGAGCGGGACCCTTGTGC

Downstream 100 bases:

>100_bases
CAGCGTCGCCCGAGGAACGAGGGCGGCGCGTGGGCTGGCGAAGGTCGAGCAAGCCGCGCGGCTGAGGAACGAAGCCGCGA
CCGGCGGGTCGAGACCCAGT

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MPEVSGARRVGLVDVRPGLGVPAVGPDVTPPVPVAVLGREHADLPALLRPVRGHPLEHLPLARGRRALLLLHDDRAVPGI
DPALEVELAVPLHDRVVQVAGRLLGPPTDRRTRNRPGGGVGRSARRLGGSRGRGQAAHAQGERGGQGRQGLTHPWGLPPR
VAGAPDRPRARNLPLGPQGQTPATPSYAVRVPEPRRGLAFGFAAYAMWGAFPLYWPLLEPAGATEILAHRVLWSALTMGL
LLLVLARTPQLRAVLRDRRVRLLLTIAAAVISVNWVTYIWGVNNDRVVETSLGYFINPLVTVLMGVVVLHERLRPLQWMA
MGLASGAVVVLAVDYGRLPWVALILAFSFGSYGLCKKTANVGATESLAFETAVIAPFAAGYLAWLGWTGGSNFASHGAGH
ALLFATTGVVTAVPLICFGAAATRVSMVTLGLLQYLAPIIQFALGVLWFHEDMPAGRWVGFVLVWIALVVFTVEAVNHRR
RQLRLTVEATTAS

Sequences:

>Translated_493_residues
MPEVSGARRVGLVDVRPGLGVPAVGPDVTPPVPVAVLGREHADLPALLRPVRGHPLEHLPLARGRRALLLLHDDRAVPGI
DPALEVELAVPLHDRVVQVAGRLLGPPTDRRTRNRPGGGVGRSARRLGGSRGRGQAAHAQGERGGQGRQGLTHPWGLPPR
VAGAPDRPRARNLPLGPQGQTPATPSYAVRVPEPRRGLAFGFAAYAMWGAFPLYWPLLEPAGATEILAHRVLWSALTMGL
LLLVLARTPQLRAVLRDRRVRLLLTIAAAVISVNWVTYIWGVNNDRVVETSLGYFINPLVTVLMGVVVLHERLRPLQWMA
MGLASGAVVVLAVDYGRLPWVALILAFSFGSYGLCKKTANVGATESLAFETAVIAPFAAGYLAWLGWTGGSNFASHGAGH
ALLFATTGVVTAVPLICFGAAATRVSMVTLGLLQYLAPIIQFALGVLWFHEDMPAGRWVGFVLVWIALVVFTVEAVNHRR
RQLRLTVEATTAS
>Mature_492_residues
PEVSGARRVGLVDVRPGLGVPAVGPDVTPPVPVAVLGREHADLPALLRPVRGHPLEHLPLARGRRALLLLHDDRAVPGID
PALEVELAVPLHDRVVQVAGRLLGPPTDRRTRNRPGGGVGRSARRLGGSRGRGQAAHAQGERGGQGRQGLTHPWGLPPRV
AGAPDRPRARNLPLGPQGQTPATPSYAVRVPEPRRGLAFGFAAYAMWGAFPLYWPLLEPAGATEILAHRVLWSALTMGLL
LLVLARTPQLRAVLRDRRVRLLLTIAAAVISVNWVTYIWGVNNDRVVETSLGYFINPLVTVLMGVVVLHERLRPLQWMAM
GLASGAVVVLAVDYGRLPWVALILAFSFGSYGLCKKTANVGATESLAFETAVIAPFAAGYLAWLGWTGGSNFASHGAGHA
LLFATTGVVTAVPLICFGAAATRVSMVTLGLLQYLAPIIQFALGVLWFHEDMPAGRWVGFVLVWIALVVFTVEAVNHRRR
QLRLTVEATTAS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=290, Percent_Identity=39.3103448275862, Blast_Score=211, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 52863; Mature: 52731

Theoretical pI: Translated: 11.70; Mature: 11.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEVSGARRVGLVDVRPGLGVPAVGPDVTPPVPVAVLGREHADLPALLRPVRGHPLEHLP
CCCCCCCCEECEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC
LARGRRALLLLHDDRAVPGIDPALEVELAVPLHDRVVQVAGRLLGPPTDRRTRNRPGGGV
CCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GRSARRLGGSRGRGQAAHAQGERGGQGRQGLTHPWGLPPRVAGAPDRPRARNLPLGPQGQ
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TPATPSYAVRVPEPRRGLAFGFAAYAMWGAFPLYWPLLEPAGATEILAHRVLWSALTMGL
CCCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLLVLARTPQLRAVLRDRRVRLLLTIAAAVISVNWVTYIWGVNNDRVVETSLGYFINPLV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEHHHHHHHHHHH
TVLMGVVVLHERLRPLQWMAMGLASGAVVVLAVDYGRLPWVALILAFSFGSYGLCKKTAN
HHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHCC
VGATESLAFETAVIAPFAAGYLAWLGWTGGSNFASHGAGHALLFATTGVVTAVPLICFGA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEHHHHHHHHHHHHHHH
AATRVSMVTLGLLQYLAPIIQFALGVLWFHEDMPAGRWVGFVLVWIALVVFTVEAVNHRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
RQLRLTVEATTAS
EEEEEEEEEECCC
>Mature Secondary Structure 
PEVSGARRVGLVDVRPGLGVPAVGPDVTPPVPVAVLGREHADLPALLRPVRGHPLEHLP
CCCCCCCEECEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC
LARGRRALLLLHDDRAVPGIDPALEVELAVPLHDRVVQVAGRLLGPPTDRRTRNRPGGGV
CCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GRSARRLGGSRGRGQAAHAQGERGGQGRQGLTHPWGLPPRVAGAPDRPRARNLPLGPQGQ
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TPATPSYAVRVPEPRRGLAFGFAAYAMWGAFPLYWPLLEPAGATEILAHRVLWSALTMGL
CCCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLLVLARTPQLRAVLRDRRVRLLLTIAAAVISVNWVTYIWGVNNDRVVETSLGYFINPLV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEHHHHHHHHHHH
TVLMGVVVLHERLRPLQWMAMGLASGAVVVLAVDYGRLPWVALILAFSFGSYGLCKKTAN
HHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHCC
VGATESLAFETAVIAPFAAGYLAWLGWTGGSNFASHGAGHALLFATTGVVTAVPLICFGA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEHHHHHHHHHHHHHHH
AATRVSMVTLGLLQYLAPIIQFALGVLWFHEDMPAGRWVGFVLVWIALVVFTVEAVNHRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
RQLRLTVEATTAS
EEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA