| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714782
Identifier: 119714782
GI number: 119714782
Start: 549035
End: 549964
Strand: Reverse
Name: 119714782
Synonym: Noca_0518
Alternate gene names: NA
Gene position: 549964-549035 (Counterclockwise)
Preceding gene: 119714799
Following gene: 119714780
Centisome position: 11.03
GC content: 73.87
Gene sequence:
>930_bases ATGTTGCTCGCGCGTCGCCTGCTGCTCCTCGTCGCGGTGGCCGCGCTGCTGTGCGCCGCAGCCTTCGTGGCCGGGGACGC GCTGGACGGCGGCTCCTCGGCGCGACCCGCCGCCTCCGGGGCCGGCGCCGCGTCCACCGACCAGCCGGCGACCACCGATC CGACCGCGGCGCCGAGCTCCTCCGACCCCACCGCGACACCCGGCAGCAGCCCCACCGACGCTCCCGCCCCCACGGCCGCC GACGAACCGACCCGGCAGCCCACCCACCTGCCCACCCGCCAGCCCACGCTCGTACCGGGCCCGCGCCTGCTGGGCCCGGG CGACCAGGGCGACGAGGTCCGCGACCTGCAGGCCCGCCTCAAGCAGATCTACTGGTTCAACACCGACGTCACCGGCGTCT ACGGCGACGTCACCGCCACCGCCGTACGCGGCTTCCAGGCCAAGCGGGAGATCCCGGTCACCGGCGAGGTCGACCAGCGC ACCCTGGACCGGCTCCGCGCGATGACGAGCACCCCGACCGGCGCCGAGCTGCACAACCGCGGCAACACGCCGGGCGCCCT CGATGCGCGCTGCCGGACCGGTCGGGTGCTCTGCATCGACAAGACCAGCTCGACCCTGCGCTGGGTGGTCGACGGGACGG TGCGACAGACCCTGGACGTCCGGTTCGGCGCGTCGACGACCCCGACGCGGGAGGGTGTCTTCCACGTGTACCTGAAGGAC GCCGACCACGTCTCGCGGCTCTACGGCTCGGCGATGCCGTACTCGATGTTCTTCTCCGGCGGCCAGGCGGTGCACTACTC GTCGGACTTCGCCGCCGTCGGGTACGCCGGCGCCTCGCACGGCTGCGTCAACGTGCGCGACTACGACGCGCTCGGCCTGC TCTACGGGCAGGTCCGCGTGGGCGACACGGTCGTCGTGTACTGGTCCTGA
Upstream 100 bases:
>100_bases CTTGGTCACGACCGCGGGAACTCGCCGCGCGGGTGCAACCGAGCGCCCGCTCCGGGCGTCACCCTCGTGTCGGACTCGTC TACTTCCCCAGGAGAGCTCC
Downstream 100 bases:
>100_bases CCGGGACCCTCGGCAGGGTCCTCAGGAGCCCTGGAGGTCGTCGAGCAGACCGTCCGCGGTGGCGACGAGATCCTCGGCGT CGACGTCCGGCGCCCCGATC
Product: peptidoglycan binding domain-containing protein
Products: NA
Alternate protein names: Secreted Protein; ErfK/YbiS/YcfS/YnhG Family Protein; ErfK/YbiS/YcfS/YnhG Superfamily Protein
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MLLARRLLLLVAVAALLCAAAFVAGDALDGGSSARPAASGAGAASTDQPATTDPTAAPSSSDPTATPGSSPTDAPAPTAA DEPTRQPTHLPTRQPTLVPGPRLLGPGDQGDEVRDLQARLKQIYWFNTDVTGVYGDVTATAVRGFQAKREIPVTGEVDQR TLDRLRAMTSTPTGAELHNRGNTPGALDARCRTGRVLCIDKTSSTLRWVVDGTVRQTLDVRFGASTTPTREGVFHVYLKD ADHVSRLYGSAMPYSMFFSGGQAVHYSSDFAAVGYAGASHGCVNVRDYDALGLLYGQVRVGDTVVVYWS
Sequences:
>Translated_309_residues MLLARRLLLLVAVAALLCAAAFVAGDALDGGSSARPAASGAGAASTDQPATTDPTAAPSSSDPTATPGSSPTDAPAPTAA DEPTRQPTHLPTRQPTLVPGPRLLGPGDQGDEVRDLQARLKQIYWFNTDVTGVYGDVTATAVRGFQAKREIPVTGEVDQR TLDRLRAMTSTPTGAELHNRGNTPGALDARCRTGRVLCIDKTSSTLRWVVDGTVRQTLDVRFGASTTPTREGVFHVYLKD ADHVSRLYGSAMPYSMFFSGGQAVHYSSDFAAVGYAGASHGCVNVRDYDALGLLYGQVRVGDTVVVYWS >Mature_309_residues MLLARRLLLLVAVAALLCAAAFVAGDALDGGSSARPAASGAGAASTDQPATTDPTAAPSSSDPTATPGSSPTDAPAPTAA DEPTRQPTHLPTRQPTLVPGPRLLGPGDQGDEVRDLQARLKQIYWFNTDVTGVYGDVTATAVRGFQAKREIPVTGEVDQR TLDRLRAMTSTPTGAELHNRGNTPGALDARCRTGRVLCIDKTSSTLRWVVDGTVRQTLDVRFGASTTPTREGVFHVYLKD ADHVSRLYGSAMPYSMFFSGGQAVHYSSDFAAVGYAGASHGCVNVRDYDALGLLYGQVRVGDTVVVYWS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32538; Mature: 32538
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLARRLLLLVAVAALLCAAAFVAGDALDGGSSARPAASGAGAASTDQPATTDPTAAPSS CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SDPTATPGSSPTDAPAPTAADEPTRQPTHLPTRQPTLVPGPRLLGPGDQGDEVRDLQARL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHH KQIYWFNTDVTGVYGDVTATAVRGFQAKREIPVTGEVDQRTLDRLRAMTSTPTGAELHNR HHHEEECCCCCEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCC GNTPGALDARCRTGRVLCIDKTSSTLRWVVDGTVRQTLDVRFGASTTPTREGVFHVYLKD CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHEEEEEECCCCCCCCCCEEEEEECC ADHVSRLYGSAMPYSMFFSGGQAVHYSSDFAAVGYAGASHGCVNVRDYDALGLLYGQVRV CHHHHHHHCCCCCHHHEECCCCEEEECCCCCEEECCCCCCCEEECCCCCHHEEEEEEEEE GDTVVVYWS CCEEEEEEC >Mature Secondary Structure MLLARRLLLLVAVAALLCAAAFVAGDALDGGSSARPAASGAGAASTDQPATTDPTAAPSS CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SDPTATPGSSPTDAPAPTAADEPTRQPTHLPTRQPTLVPGPRLLGPGDQGDEVRDLQARL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHH KQIYWFNTDVTGVYGDVTATAVRGFQAKREIPVTGEVDQRTLDRLRAMTSTPTGAELHNR HHHEEECCCCCEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCC GNTPGALDARCRTGRVLCIDKTSSTLRWVVDGTVRQTLDVRFGASTTPTREGVFHVYLKD CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHEEEEEECCCCCCCCCCEEEEEECC ADHVSRLYGSAMPYSMFFSGGQAVHYSSDFAAVGYAGASHGCVNVRDYDALGLLYGQVRV CHHHHHHHCCCCCHHHEECCCCEEEECCCCCEEECCCCCCCEEECCCCCHHEEEEEEEEE GDTVVVYWS CCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA