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The map label for this gene is xylH [H]

Identifier: 119714650

GI number: 119714650

Start: 415548

End: 416837

Strand: Direct

Name: xylH [H]

Synonym: Noca_0385

Alternate gene names: 119714650

Gene position: 415548-416837 (Clockwise)

Preceding gene: 119714649

Following gene: 119714651

Centisome position: 8.33

GC content: 67.21

Gene sequence:

>1290_bases
ATGAGCACCTTGACCACCACCCTGCGCGGGAACATCCGCCAGTACGGGATGATCATCGCCCTCGCGGCGATCGTGATCCT
GTTCCAGTTCACGACCGACGGCGTGCTGCTCAAGCCGCTGAACGTGTCCAACCTGGTCGTCCAGAACGCCCACATCCTGA
TCCTGGCCATCGGCATGGTGATCGTGATCGTGGCCCGCCACATCGACCTGTCGGTGGGGTCGGTCGCCGCGTTCGTCGGT
GCCGTCGGGGCGATCTTGATGACCAAGTACGACGTGCCCTGGCTGCTGGCGGTGATCCTCTGCCTCGCGCTGGGTGCCCT
GATCGGAGCCTGGCACGGCTTCTGGGTGGCGTACGTCGGCATCCCCGCGTTCATCGTGACCCTCGCGAGCATGCTGCTCT
TCCGCGGGCTCACGCTCGTCGTGCTCGAGGGCGCGACCGTCGGCGGCCTGCCCGAGGGCTTCAAGAAGATCGGCAACGGG
TTCCTCCCCGAGATCGGTCCCGACACCGACCTGCACAACCTGACCCTGCTCCTCGGTCTGCTCGTCGTCGCCCTGCTGGT
CTTCTTCGACTTCCGCAAGCGCACCGCCGCGAAGCGCTACAACTTCGAGGTCCTGCCCATCCCGCTGTTCGCGCTCAAGC
AGATCGTGCTCGGCGCGGTCATCATGGAGTTCAGCTACCTGCTCGCCGACGCCCGCGGGCTGCCGATCGTCGGCCTGATC
CTGTTCACGCTGATCGGCGTCTACACGTTCATCATGTCCCGCACGATCTTCGGCCGGCACGTCTACGCGATCGGCGGCAA
CGTCGACGCGGCGACGATGTCGGGCGTCAACACCAAGCGGGTCGACTTCCTCGTGATGACGAACATGGGCCTGCTCGCCG
GGCTCGCGGGCCTGGTCACCACCGCTCGACTCACCGCGGCGAACCCGAAGGCCGGCGTGAACTTCGAGCTCGACGCGATC
GCCGCGTCGTTCATCGGTGGCGCAGCAGTCACCGGCGGTGTGGGCACCGTGATCGGCGCCATCATCGGTGGTCTGGTCAT
GGGTGTCCTCAACAACGGCATGTCGCTGAACGGCGTCTCCATCGACTGGCAGCAGGCGATCAAGGGCCTGGTGCTCCTCG
GCGCCGTCGCGTTCGACGTCTGGAACAAGAAGCGCACCGCAGGAAGTGGCGGGGCCGGTGCCGAGGCCGAGGCCACTCCG
CCGCCACCGGACGAGCTGGTCGAGGAGATCCGGAACCTCGAGGCGGACGCCGGGCCACCCGGCCACGGCTCAGGGGCCGG
CGTCCGCTGA

Upstream 100 bases:

>100_bases
CTACACGCTCGCGGAGGGCGTGATCACCCACGAGTTCGTGCGTGGGGGCGCCACCCAGGAGTCCCTCATGCGTTACATGA
CAGCGGATGCGAGATAACTG

Downstream 100 bases:

>100_bases
TCGCCCCCACAGACCGGTGCTGATCGGCAGTCCCCGTCGAGCCGCCGTCCGGTTGGCGTGCCGGAGGTTGACGACACCGC
TCGGCTCCACCTCCAGGCCG

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSTLTTTLRGNIRQYGMIIALAAIVILFQFTTDGVLLKPLNVSNLVVQNAHILILAIGMVIVIVARHIDLSVGSVAAFVG
AVGAILMTKYDVPWLLAVILCLALGALIGAWHGFWVAYVGIPAFIVTLASMLLFRGLTLVVLEGATVGGLPEGFKKIGNG
FLPEIGPDTDLHNLTLLLGLLVVALLVFFDFRKRTAAKRYNFEVLPIPLFALKQIVLGAVIMEFSYLLADARGLPIVGLI
LFTLIGVYTFIMSRTIFGRHVYAIGGNVDAATMSGVNTKRVDFLVMTNMGLLAGLAGLVTTARLTAANPKAGVNFELDAI
AASFIGGAAVTGGVGTVIGAIIGGLVMGVLNNGMSLNGVSIDWQQAIKGLVLLGAVAFDVWNKKRTAGSGGAGAEAEATP
PPPDELVEEIRNLEADAGPPGHGSGAGVR

Sequences:

>Translated_429_residues
MSTLTTTLRGNIRQYGMIIALAAIVILFQFTTDGVLLKPLNVSNLVVQNAHILILAIGMVIVIVARHIDLSVGSVAAFVG
AVGAILMTKYDVPWLLAVILCLALGALIGAWHGFWVAYVGIPAFIVTLASMLLFRGLTLVVLEGATVGGLPEGFKKIGNG
FLPEIGPDTDLHNLTLLLGLLVVALLVFFDFRKRTAAKRYNFEVLPIPLFALKQIVLGAVIMEFSYLLADARGLPIVGLI
LFTLIGVYTFIMSRTIFGRHVYAIGGNVDAATMSGVNTKRVDFLVMTNMGLLAGLAGLVTTARLTAANPKAGVNFELDAI
AASFIGGAAVTGGVGTVIGAIIGGLVMGVLNNGMSLNGVSIDWQQAIKGLVLLGAVAFDVWNKKRTAGSGGAGAEAEATP
PPPDELVEEIRNLEADAGPPGHGSGAGVR
>Mature_428_residues
STLTTTLRGNIRQYGMIIALAAIVILFQFTTDGVLLKPLNVSNLVVQNAHILILAIGMVIVIVARHIDLSVGSVAAFVGA
VGAILMTKYDVPWLLAVILCLALGALIGAWHGFWVAYVGIPAFIVTLASMLLFRGLTLVVLEGATVGGLPEGFKKIGNGF
LPEIGPDTDLHNLTLLLGLLVVALLVFFDFRKRTAAKRYNFEVLPIPLFALKQIVLGAVIMEFSYLLADARGLPIVGLIL
FTLIGVYTFIMSRTIFGRHVYAIGGNVDAATMSGVNTKRVDFLVMTNMGLLAGLAGLVTTARLTAANPKAGVNFELDAIA
ASFIGGAAVTGGVGTVIGAIIGGLVMGVLNNGMSLNGVSIDWQQAIKGLVLLGAVAFDVWNKKRTAGSGGAGAEAEATPP
PPDELVEEIRNLEADAGPPGHGSGAGVR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=376, Percent_Identity=40.6914893617021, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1790191, Length=345, Percent_Identity=35.6521739130435, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI1790524, Length=367, Percent_Identity=31.8801089918256, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788896, Length=155, Percent_Identity=38.0645161290323, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693152, Length=138, Percent_Identity=34.0579710144928, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082395, Length=160, Percent_Identity=33.125, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787793, Length=186, Percent_Identity=29.5698924731183, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788471, Length=133, Percent_Identity=39.0977443609023, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787794, Length=144, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 44764; Mature: 44633

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTTTLRGNIRQYGMIIALAAIVILFQFTTDGVLLKPLNVSNLVVQNAHILILAIGMV
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCHHHHHHHHHH
IVIVARHIDLSVGSVAAFVGAVGAILMTKYDVPWLLAVILCLALGALIGAWHGFWVAYVG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAFIVTLASMLLFRGLTLVVLEGATVGGLPEGFKKIGNGFLPEIGPDTDLHNLTLLLGL
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVVALLVFFDFRKRTAAKRYNFEVLPIPLFALKQIVLGAVIMEFSYLLADARGLPIVGLI
HHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LFTLIGVYTFIMSRTIFGRHVYAIGGNVDAATMSGVNTKRVDFLVMTNMGLLAGLAGLVT
HHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCHHEEEEEECCHHHHHHHHHHHH
TARLTAANPKAGVNFELDAIAASFIGGAAVTGGVGTVIGAIIGGLVMGVLNNGMSLNGVS
HHHHCCCCCCCCCCEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
IDWQQAIKGLVLLGAVAFDVWNKKRTAGSGGAGAEAEATPPPPDELVEEIRNLEADAGPP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
GHGSGAGVR
CCCCCCCCC
>Mature Secondary Structure 
STLTTTLRGNIRQYGMIIALAAIVILFQFTTDGVLLKPLNVSNLVVQNAHILILAIGMV
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCHHHHHHHHHH
IVIVARHIDLSVGSVAAFVGAVGAILMTKYDVPWLLAVILCLALGALIGAWHGFWVAYVG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAFIVTLASMLLFRGLTLVVLEGATVGGLPEGFKKIGNGFLPEIGPDTDLHNLTLLLGL
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVVALLVFFDFRKRTAAKRYNFEVLPIPLFALKQIVLGAVIMEFSYLLADARGLPIVGLI
HHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LFTLIGVYTFIMSRTIFGRHVYAIGGNVDAATMSGVNTKRVDFLVMTNMGLLAGLAGLVT
HHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCHHEEEEEECCHHHHHHHHHHHH
TARLTAANPKAGVNFELDAIAASFIGGAAVTGGVGTVIGAIIGGLVMGVLNNGMSLNGVS
HHHHCCCCCCCCCCEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
IDWQQAIKGLVLLGAVAFDVWNKKRTAGSGGAGAEAEATPPPPDELVEEIRNLEADAGPP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
GHGSGAGVR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]