| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is dsbE [C]
Identifier: 119714607
GI number: 119714607
Start: 362812
End: 363423
Strand: Direct
Name: dsbE [C]
Synonym: Noca_0341
Alternate gene names: 119714607
Gene position: 362812-363423 (Clockwise)
Preceding gene: 119714606
Following gene: 119714608
Centisome position: 7.28
GC content: 73.53
Gene sequence:
>612_bases ATGAGGCGACTCCTCCCGGCCGTGCTCGCCGCGGCCGTGCTGGTGCTGGGCGCGTGCGGCTCCGCGGACCTGCCGAAACC ACCCGGCCAGGCCAAGGTCGACGTCGACACCCCCGAGCTGCGCGCGATCCGCGCGGACGCCGGCATCGAGCCGTGCCGGC AGGCCGCGGGCGCGGCGGTCGACGGCGGCCTGCCCGACGTGACGCTGCCCTGCCTCGGCGGCGGTCCCGACGTCGACCTG GCCGGGCTCCGTGGTCCGGTCGTGGTGAACCTGTGGGCCTCGTGGTGCGGCCCGTGCCGCAAGGAGCTGCCGATCTACCA GCAGTTCCACGAGCGGTACGGCGACCGGGTCGGCGTCGTCGGCATCGACTACAACGACGTCCAGCCGAAGGCCGCGCTCG AGCTCGCCCGCGACACCGGCGTCACCTACCCGCTGCTCGCCGACCCCGGATCCACCCTCGAGGGCACCGAGTCGTTCCCG ACCATCCCCGGCCTGCCCTGGGTCGTCCTGGTCGACGCCGACGGCAAGGTCGTGCACAAGCAGGCGATCGAGATCACCAG CGTCGACCAGCTCGTCGGCCTGGTCGACGAGCACCTCGGGACCGACCTGTGA
Upstream 100 bases:
>100_bases CCTGTGGGGCGTGCCCGGTCGCGCGCTGGTGCCCGGCGTACGGCGAGGGGCCGACCGACCCGGCCGCCGCGGCGAAGCTG GTGAAGACCGAGGGCAGGGC
Downstream 100 bases:
>100_bases TCCCCGACTGGCTGGTGCCGGTCCGCGACGGCGCGGCCGCCATCTCGGCCGACCAGCTCACCAGGTTCACCCCTCCGGCG GGTGGAGACGCCCGGCGTGG
Product: redoxin domain-containing protein
Products: NA
Alternate protein names: Secreted Protein; Thiol-Disulfide Oxidoreductase; Thioredoxin; ThiolDisulfide Interchange Protein DsbE; Redoxin Domain Protein; Thiol-Disulfide Isomerase-Like Thioredoxin; Peroxiredoxin-Like Protein; Twin-Arginine Translocation Pathway Signal; Thioredoxin Family Protein; Thioredoxin Related Protein; C-Type Cytochrome Biogenesis Protein/Thioredoxin DsbE; Redoxin; Cytochrome C Biogenesis Protein Transmembrane Region Family; Periplasmic Protein Thiol/Disulfide Oxidoreductase DsbE; ThiolDisulfide Interchange Protein; Alkyl Hydroperoxide Reductase; ThiolDisulfide Interchange Protein Dsbe; Protein Disulfide Isomerase; LOW QUALITY PROTEIN Membrane-Anchored Thioredoxin; Thiol-Disulfide Isomerase-Like Protein; ThiolDisulfide Interchange Protein HelX; Thiol-Disulfide Isomerase And Thioredoxins; Cytochrome C Biogenesis Protein; Thioredoxin Family ThiolDisulfide Interchange Protein
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MRRLLPAVLAAAVLVLGACGSADLPKPPGQAKVDVDTPELRAIRADAGIEPCRQAAGAAVDGGLPDVTLPCLGGGPDVDL AGLRGPVVVNLWASWCGPCRKELPIYQQFHERYGDRVGVVGIDYNDVQPKAALELARDTGVTYPLLADPGSTLEGTESFP TIPGLPWVVLVDADGKVVHKQAIEITSVDQLVGLVDEHLGTDL
Sequences:
>Translated_203_residues MRRLLPAVLAAAVLVLGACGSADLPKPPGQAKVDVDTPELRAIRADAGIEPCRQAAGAAVDGGLPDVTLPCLGGGPDVDL AGLRGPVVVNLWASWCGPCRKELPIYQQFHERYGDRVGVVGIDYNDVQPKAALELARDTGVTYPLLADPGSTLEGTESFP TIPGLPWVVLVDADGKVVHKQAIEITSVDQLVGLVDEHLGTDL >Mature_203_residues MRRLLPAVLAAAVLVLGACGSADLPKPPGQAKVDVDTPELRAIRADAGIEPCRQAAGAAVDGGLPDVTLPCLGGGPDVDL AGLRGPVVVNLWASWCGPCRKELPIYQQFHERYGDRVGVVGIDYNDVQPKAALELARDTGVTYPLLADPGSTLEGTESFP TIPGLPWVVLVDADGKVVHKQAIEITSVDQLVGLVDEHLGTDL
Specific function: Involved In Disulfide Bond Formation. Catalyzes A Late, Reductive Step In The Assembly Of Periplasmic C-Type Cytochromes, Probably The Reduction Of Disulfide Bonds Of The Apocytochrome C To Allow Covalent Linkage With The Heme. Possible Subunit Of A Heme
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21242; Mature: 21242
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLLPAVLAAAVLVLGACGSADLPKPPGQAKVDVDTPELRAIRADAGIEPCRQAAGAAV CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHEEEECCCCCHHHHHHCCCCC DGGLPDVTLPCLGGGPDVDLAGLRGPVVVNLWASWCGPCRKELPIYQQFHERYGDRVGVV CCCCCCCEEECCCCCCCCEECCCCCCEEEEEHHHHCCHHHHCCCHHHHHHHHHCCEEEEE GIDYNDVQPKAALELARDTGVTYPLLADPGSTLEGTESFPTIPGLPWVVLVDADGKVVHK ECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHH QAIEITSVDQLVGLVDEHLGTDL HHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRRLLPAVLAAAVLVLGACGSADLPKPPGQAKVDVDTPELRAIRADAGIEPCRQAAGAAV CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHEEEECCCCCHHHHHHCCCCC DGGLPDVTLPCLGGGPDVDLAGLRGPVVVNLWASWCGPCRKELPIYQQFHERYGDRVGVV CCCCCCCEEECCCCCCCCEECCCCCCEEEEEHHHHCCHHHHCCCHHHHHHHHHCCEEEEE GIDYNDVQPKAALELARDTGVTYPLLADPGSTLEGTESFPTIPGLPWVVLVDADGKVVHK ECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHH QAIEITSVDQLVGLVDEHLGTDL HHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA