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The map label for this gene is whiG [H]

Identifier: 119714598

GI number: 119714598

Start: 355713

End: 356549

Strand: Reverse

Name: whiG [H]

Synonym: Noca_0332

Alternate gene names: 119714598

Gene position: 356549-355713 (Counterclockwise)

Preceding gene: 119714605

Following gene: 119714595

Centisome position: 7.15

GC content: 76.11

Gene sequence:

>837_bases
ATGACAATCGCGGAGCGCGACCAGCTCGCCGTCCAGCACGTGCCGCTGGTGGCGCACCTGGTGCGCGAGACCATGGCGCG
GGTGCCGTCGTACATGGACCGCAACGACCTGCACTCCGCAGGCCTCCTCGCGCTCGTCCAGGCCGCCCGCGCCTTCGACC
CCGAGCGCGGGGTGCCGTTCGCCGGCTACGCCTCCACTCGGATCCGCGGCGCGCTGGTCGACGAGCTGCGCTCGGTGGAC
TGGGCCTCGCGCTCGGTGCGCCGCCGTGCCCGGGAGATCGAGGCGGCACGGGCCCGCCTGGCCGCGACCTTGGGTCAGTT
CCCCGACGACGCCGCGGTCGCCGAGGCCCTGGGGATCACCCCGGAGGAGATCGGCAAGGCCGACTCCGAGGTGGCCCGGG
CCGTGGTGCTGCCGCTCGACGCGGGCCCGAACGCGGGGTTCGTCGAGAGCCTGGCCGGTCGCGACCCCGGCCCCGAGGAG
GAGGCGCTGCACGCCGAGCGCGCGCAGTACCTCGCGGCCGCGATCGAGGAGCTTCCCGAGCGGCTGCGCCACGTGGTGCG
CGGCTACTTCGTCGCGCAGCGGCCGATGGCCGAGCTGGCCGCCGAGCTCGGGGTCAGCGAGTCTCGGATCTCGCAGCTGC
GCGCCGAAGCACTGGTGCTCCTGCGCGACGCCCTCGCCGAGGCCTTCGAGCCGCACCTGGCCGCGCCGCACCCGAACCCC
GACGGTGTCGCGGCTCGGCGCCGGCTCGCCTACACCAGCGCCGTCGCCGCCCGGTACGCCGCCCGCCGGACGATGCCCGC
CGCCCGCGTCCGCGAGGGGCTCAGCTCGATCGCCTAG

Upstream 100 bases:

>100_bases
GACCGGGTGGGTGGTCTCGCGGGCTAATCCCCCGGGTTTGGCGTCATGACCGGTCCGGATATGAGTCACTACTCCCGTGA
ACTCGGGCCGTTCGACCCCC

Downstream 100 bases:

>100_bases
AGCGTGGAACCGGGGCGGCCGGCCGATGAATCGGGAGTGCTACCCGTCGAATCGGGGTTTCCGTCGGTCGGTTCGCCCGA
CTCGACCGCCAGAAGTCACG

Product: sigma-70 region 4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTIAERDQLAVQHVPLVAHLVRETMARVPSYMDRNDLHSAGLLALVQAARAFDPERGVPFAGYASTRIRGALVDELRSVD
WASRSVRRRAREIEAARARLAATLGQFPDDAAVAEALGITPEEIGKADSEVARAVVLPLDAGPNAGFVESLAGRDPGPEE
EALHAERAQYLAAAIEELPERLRHVVRGYFVAQRPMAELAAELGVSESRISQLRAEALVLLRDALAEAFEPHLAAPHPNP
DGVAARRRLAYTSAVAARYAARRTMPAARVREGLSSIA

Sequences:

>Translated_278_residues
MTIAERDQLAVQHVPLVAHLVRETMARVPSYMDRNDLHSAGLLALVQAARAFDPERGVPFAGYASTRIRGALVDELRSVD
WASRSVRRRAREIEAARARLAATLGQFPDDAAVAEALGITPEEIGKADSEVARAVVLPLDAGPNAGFVESLAGRDPGPEE
EALHAERAQYLAAAIEELPERLRHVVRGYFVAQRPMAELAAELGVSESRISQLRAEALVLLRDALAEAFEPHLAAPHPNP
DGVAARRRLAYTSAVAARYAARRTMPAARVREGLSSIA
>Mature_277_residues
TIAERDQLAVQHVPLVAHLVRETMARVPSYMDRNDLHSAGLLALVQAARAFDPERGVPFAGYASTRIRGALVDELRSVDW
ASRSVRRRAREIEAARARLAATLGQFPDDAAVAEALGITPEEIGKADSEVARAVVLPLDAGPNAGFVESLAGRDPGPEEE
ALHAERAQYLAAAIEELPERLRHVVRGYFVAQRPMAELAAELGVSESRISQLRAEALVLLRDALAEAFEPHLAAPHPNPD
GVAARRRLAYTSAVAARYAARRTMPAARVREGLSSIA

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=230, Percent_Identity=34.3478260869565, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 30036; Mature: 29905

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAERDQLAVQHVPLVAHLVRETMARVPSYMDRNDLHSAGLLALVQAARAFDPERGVPF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
AGYASTRIRGALVDELRSVDWASRSVRRRAREIEAARARLAATLGQFPDDAAVAEALGIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
PEEIGKADSEVARAVVLPLDAGPNAGFVESLAGRDPGPEEEALHAERAQYLAAAIEELPE
HHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLRHVVRGYFVAQRPMAELAAELGVSESRISQLRAEALVLLRDALAEAFEPHLAAPHPNP
HHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DGVAARRRLAYTSAVAARYAARRTMPAARVREGLSSIA
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TIAERDQLAVQHVPLVAHLVRETMARVPSYMDRNDLHSAGLLALVQAARAFDPERGVPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
AGYASTRIRGALVDELRSVDWASRSVRRRAREIEAARARLAATLGQFPDDAAVAEALGIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
PEEIGKADSEVARAVVLPLDAGPNAGFVESLAGRDPGPEEEALHAERAQYLAAAIEELPE
HHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLRHVVRGYFVAQRPMAELAAELGVSESRISQLRAEALVLLRDALAEAFEPHLAAPHPNP
HHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DGVAARRRLAYTSAVAARYAARRTMPAARVREGLSSIA
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]