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The map label for this gene is ybdL [C]

Identifier: 119714562

GI number: 119714562

Start: 312991

End: 314172

Strand: Reverse

Name: ybdL [C]

Synonym: Noca_0295

Alternate gene names: 119714562

Gene position: 314172-312991 (Counterclockwise)

Preceding gene: 119714563

Following gene: 119714561

Centisome position: 6.3

GC content: 72.84

Gene sequence:

>1182_bases
ATGACCGACCGCTTCCAGGTGGCCAGCCGGGCCAACGTGCCGCCGTTCCACGTGATGGACCTGCTGGCGGCGTCGGCGGA
GCGGCAGCGCACCCACGGCGACGTGCTGAACCTGCTCGCCGGTCAGCCGATGACCGGGGCGCCGGCGCCGGTGCGCGAGG
AGGCGAAGCGGCTCCTCGACTCCGGTGACCCACTGGGCTACACGCCGGCGGCCGGGATCCGGGAGCTGCGCGAGGCGATC
GCCGGGCACCACCGGCGCGCCCACGGCATCGAGGTCGACCCCGACCACGTCGTCGTGACCACCGGGAGCAGCGGCGGCTT
CCTGCTGGCGTTCCTCGCGGCGTTCGAGGTGGGCGACCGGGTGGCGATGGCGCGGCCCGGCTACCCCTGCTACCGCAACG
TGCTGACCGCGCTCGGCTGCGAGGTCGTGGAGATCCCGACCGGCCCGGAGACCCGGTTCCAGCCCACGGTGGAGCAGCTC
GACGGCCTGGCCGACATCCGGGGCCTGGTCGTCGCGAGCCCCGCCAACCCCACGGGCACCATGCTGCTCCCGAGCGAGCT
GGCCGCGCTTGCGGCGTACTGCGAGGAGCGCGGCATCCAGCTGATCAGCGACGAGATCTACCACGGGATCGAGTACGCGC
CGCTCTCCGGTGCGGAGCCGTTGGCCCGCAGCGCCTGGGAGACCAGCCGCGAGGCCGTCGTGTTCTCCAGCTTCTCGAAG
TACTTCTCGATGACCGGCTGGCGGATCGGCTGGATGCTCGCACCCGACCGGCTCCGCCGTGCCGTGGACGTGCTGACCGG
CAACTTCACGATCTGCCCGCCGGTGATCGCCCAACGCGCCTGCCTGGCCGCGTTCGACGACGCGTCGTACGCCGAGCTCG
ACGGCCACGTCGCGCGGTACGCCGAGAACCGCCGGATCCTGCTCGACGGCCTGCCGAAGCTCGGCATCACCGAGCTCGCC
CCCGCCGACGGCGCCTTCTACGTCTATGCCGACGTCGGCCACCTCACCGACGACACGATGCGCTTCGCCCGCGACCTGCT
CGCCCGGACCGGCGTGGCCGTCGCACCGGGCGTCGACTTCGACACCGTCGTCGGGCCGCGCTTCGTCCGGCTCAGCTTCG
CTGGCCCCGGCGCCGACATCGAGCTGGCCCTCGAGCGGCTGTCCACAGTGCTCGACCGCTGA

Upstream 100 bases:

>100_bases
GTTCACCGGGGAAGTCGGAACTTCTGGCCCGAAGTTTCGGCCCAACAGTTCCGGTTTCCCCGGCCCACCGGGGAAACCGA
CCACCACCTACAGTCACCCC

Downstream 100 bases:

>100_bases
GGTTTCTCCACAGCGCCCGTCCGGCAAGGCTCCCCTCGACCAGGCACCACTTCGAGGGGGAGCAGATGTACGGAGACACC
GGAACCATCCGGGCGCTCGC

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MTDRFQVASRANVPPFHVMDLLAASAERQRTHGDVLNLLAGQPMTGAPAPVREEAKRLLDSGDPLGYTPAAGIRELREAI
AGHHRRAHGIEVDPDHVVVTTGSSGGFLLAFLAAFEVGDRVAMARPGYPCYRNVLTALGCEVVEIPTGPETRFQPTVEQL
DGLADIRGLVVASPANPTGTMLLPSELAALAAYCEERGIQLISDEIYHGIEYAPLSGAEPLARSAWETSREAVVFSSFSK
YFSMTGWRIGWMLAPDRLRRAVDVLTGNFTICPPVIAQRACLAAFDDASYAELDGHVARYAENRRILLDGLPKLGITELA
PADGAFYVYADVGHLTDDTMRFARDLLARTGVAVAPGVDFDTVVGPRFVRLSFAGPGADIELALERLSTVLDR

Sequences:

>Translated_393_residues
MTDRFQVASRANVPPFHVMDLLAASAERQRTHGDVLNLLAGQPMTGAPAPVREEAKRLLDSGDPLGYTPAAGIRELREAI
AGHHRRAHGIEVDPDHVVVTTGSSGGFLLAFLAAFEVGDRVAMARPGYPCYRNVLTALGCEVVEIPTGPETRFQPTVEQL
DGLADIRGLVVASPANPTGTMLLPSELAALAAYCEERGIQLISDEIYHGIEYAPLSGAEPLARSAWETSREAVVFSSFSK
YFSMTGWRIGWMLAPDRLRRAVDVLTGNFTICPPVIAQRACLAAFDDASYAELDGHVARYAENRRILLDGLPKLGITELA
PADGAFYVYADVGHLTDDTMRFARDLLARTGVAVAPGVDFDTVVGPRFVRLSFAGPGADIELALERLSTVLDR
>Mature_392_residues
TDRFQVASRANVPPFHVMDLLAASAERQRTHGDVLNLLAGQPMTGAPAPVREEAKRLLDSGDPLGYTPAAGIRELREAIA
GHHRRAHGIEVDPDHVVVTTGSSGGFLLAFLAAFEVGDRVAMARPGYPCYRNVLTALGCEVVEIPTGPETRFQPTVEQLD
GLADIRGLVVASPANPTGTMLLPSELAALAAYCEERGIQLISDEIYHGIEYAPLSGAEPLARSAWETSREAVVFSSFSKY
FSMTGWRIGWMLAPDRLRRAVDVLTGNFTICPPVIAQRACLAAFDDASYAELDGHVARYAENRRILLDGLPKLGITELAP
ADGAFYVYADVGHLTDDTMRFARDLLARTGVAVAPGVDFDTVVGPRFVRLSFAGPGADIELALERLSTVLDR

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=396, Percent_Identity=23.7373737373737, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI169881279, Length=396, Percent_Identity=23.7373737373737, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI215599424, Length=395, Percent_Identity=25.3164556962025, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI19263340, Length=395, Percent_Identity=25.3164556962025, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI56713256, Length=330, Percent_Identity=25.1515151515152, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI56713254, Length=330, Percent_Identity=25.1515151515152, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI4507369, Length=405, Percent_Identity=22.962962962963, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4885351, Length=379, Percent_Identity=27.7044854881267, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI1786816, Length=364, Percent_Identity=29.1208791208791, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788722, Length=358, Percent_Identity=25.9776536312849, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790797, Length=371, Percent_Identity=25.8760107816712, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788627, Length=385, Percent_Identity=23.6363636363636, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787710, Length=335, Percent_Identity=25.9701492537313, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994476, Length=398, Percent_Identity=24.3718592964824, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71994472, Length=398, Percent_Identity=24.3718592964824, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17567369, Length=403, Percent_Identity=22.3325062034739, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17567663, Length=368, Percent_Identity=21.7391304347826, Blast_Score=78, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6322401, Length=394, Percent_Identity=23.8578680203046, Blast_Score=98, Evalue=2e-21,
Organism=Drosophila melanogaster, GI18859735, Length=350, Percent_Identity=28.8571428571429, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI45551451, Length=428, Percent_Identity=24.2990654205607, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641770, Length=428, Percent_Identity=24.2990654205607, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641760, Length=428, Percent_Identity=24.2990654205607, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641768, Length=428, Percent_Identity=24.2990654205607, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641766, Length=428, Percent_Identity=24.2990654205607, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641764, Length=428, Percent_Identity=24.2990654205607, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573069, Length=393, Percent_Identity=23.1552162849873, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24646114, Length=393, Percent_Identity=23.1552162849873, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28573067, Length=393, Percent_Identity=23.1552162849873, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28573065, Length=393, Percent_Identity=23.1552162849873, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42384; Mature: 42252

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRFQVASRANVPPFHVMDLLAASAERQRTHGDVLNLLAGQPMTGAPAPVREEAKRLLD
CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
SGDPLGYTPAAGIRELREAIAGHHRRAHGIEVDPDHVVVTTGSSGGFLLAFLAAFEVGDR
CCCCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCE
VAMARPGYPCYRNVLTALGCEVVEIPTGPETRFQPTVEQLDGLADIRGLVVASPANPTGT
EEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHCCHHHHCCEEEECCCCCCCC
MLLPSELAALAAYCEERGIQLISDEIYHGIEYAPLSGAEPLARSAWETSREAVVFSSFSK
EECHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
YFSMTGWRIGWMLAPDRLRRAVDVLTGNFTICPPVIAQRACLAAFDDASYAELDGHVARY
HHHCCCCEEEEEECHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHH
AENRRILLDGLPKLGITELAPADGAFYVYADVGHLTDDTMRFARDLLARTGVAVAPGVDF
HCCCEEEECCCCCCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCC
DTVVGPRFVRLSFAGPGADIELALERLSTVLDR
HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDRFQVASRANVPPFHVMDLLAASAERQRTHGDVLNLLAGQPMTGAPAPVREEAKRLLD
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
SGDPLGYTPAAGIRELREAIAGHHRRAHGIEVDPDHVVVTTGSSGGFLLAFLAAFEVGDR
CCCCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCE
VAMARPGYPCYRNVLTALGCEVVEIPTGPETRFQPTVEQLDGLADIRGLVVASPANPTGT
EEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHCCHHHHCCEEEECCCCCCCC
MLLPSELAALAAYCEERGIQLISDEIYHGIEYAPLSGAEPLARSAWETSREAVVFSSFSK
EECHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
YFSMTGWRIGWMLAPDRLRRAVDVLTGNFTICPPVIAQRACLAAFDDASYAELDGHVARY
HHHCCCCEEEEEECHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHH
AENRRILLDGLPKLGITELAPADGAFYVYADVGHLTDDTMRFARDLLARTGVAVAPGVDF
HCCCEEEECCCCCCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCC
DTVVGPRFVRLSFAGPGADIELALERLSTVLDR
HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]