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The map label for this gene is rnz [H]

Identifier: 119714472

GI number: 119714472

Start: 220244

End: 221431

Strand: Reverse

Name: rnz [H]

Synonym: Noca_0205

Alternate gene names: 119714472

Gene position: 221431-220244 (Counterclockwise)

Preceding gene: 119714479

Following gene: 119714471

Centisome position: 4.44

GC content: 73.06

Gene sequence:

>1188_bases
ATGTGCGCGACTCCAGACCGTCCGATCAGCCGCCGCGGCCTCCTGCACACGGGCGGCCTCGCCACCGCCGCGATCGCCGC
CAGCAGCGCGCTCCCACCCACGCGCGCCGAGGCCGCGACCGTACGTCGCAGCACCCGGGCCACCCGCGACTACCGGACCA
AGGTCGTCCTGCTGGGGACCTCCGGGGGGCCGATCTGGTGGCGCGGCTCGACGCGACGCGGCACGTCGTCCGCGGTGGTC
GTCGGCGATGCGCAGTACATCGTGGACCTCGGCGCCGGGGCGCTCGGCTCGGTGCGGGACGCGGGACTGCTCGGCAGTGC
CGACGGCAAGAACGACCTGCACGCGCTGCGCGGCGTGTTCTTGACCCACCTGCACTCCGACCACGTCAGCGACTACCCGA
CGCTGGTGATCGAGGGGTGGATCGGAGGCGGCCTCGGCGACGCCGAGCGGGCCCTCCAGGTCTACGGCCCGGGGCGGCGC
GACGCGCTGCCGCACACCTTCCCGGCGGGCCGACCGGAGCCGAGCCCGGTCATCCCCGACAACCCGGGCCCGGGCACGGT
CGAGATGACCGAGTCGCTTTTCGCCGCCTTCGCCACCGACATCAACGACCGGGTCTTCGACTCGGCATCCCCCGACATCC
GTAGCCGCATCCAGCCGCACGACATCGCGCTGCCCGCGGACGTGGCCGCGCCGGAGGCCGGGGCGGTCCCGCGCATGTCG
CCGTTCTCGGTCTACGAGGACGATCGGGTGCGGGTCACCGCGACGCTCGTGGATCACGGCCAGATGCTGCCGTCGTTCGG
CTACCGGTTCGACACCGAGGACGGGTCGGTCGTGATCTCGGGCGACACGACGGTGTCGGAGAACCTGGTCGAGCTCGCCG
CGGACTGCGACGTCCTGGTCCACGAGGTGATCGACCAGGCCTGGGTCGAGGAGAGCATCTCCGCCCTCCCCGCGCCCGAC
GAGGTCAAGGCTGCCTACAAGAACCACATGCTGGGTGCCCACACCACGATCCCGCAGGTGGCCCGAGTGGCGACCGAGGC
CGGCGCCCGCACGCTCGTGCTGCACCACTTCGTGCCGGGCCACCTCCCCGAGCGCCGCTGGCGCCGCGTCTCCCGGAACT
TCGCCGGAGAGCTCGTCGTCGGGCAGGACCTGCAGCGGATCGGCGTCGGCCGGCGCCGTCGCGGATGA

Upstream 100 bases:

>100_bases
GACCGTTCTGGCAAGGGGTTGCGCCGGTCACATTTCGTGCGGCAGTGTCGCAGCTCACGCTGTAGTGATCACTACGGAAA
CTCGAGAAGGGACAGACCTC

Downstream 100 bases:

>100_bases
GCGCCCCGCAGCCCCGGACCCCTTGATTCTCCGGGGGTTCGGGGTTGCGGAGATCGCGCCGGGGTGCAACCCTGCTCTCT
GTAACGATCACTACATGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MCATPDRPISRRGLLHTGGLATAAIAASSALPPTRAEAATVRRSTRATRDYRTKVVLLGTSGGPIWWRGSTRRGTSSAVV
VGDAQYIVDLGAGALGSVRDAGLLGSADGKNDLHALRGVFLTHLHSDHVSDYPTLVIEGWIGGGLGDAERALQVYGPGRR
DALPHTFPAGRPEPSPVIPDNPGPGTVEMTESLFAAFATDINDRVFDSASPDIRSRIQPHDIALPADVAAPEAGAVPRMS
PFSVYEDDRVRVTATLVDHGQMLPSFGYRFDTEDGSVVISGDTTVSENLVELAADCDVLVHEVIDQAWVEESISALPAPD
EVKAAYKNHMLGAHTTIPQVARVATEAGARTLVLHHFVPGHLPERRWRRVSRNFAGELVVGQDLQRIGVGRRRRG

Sequences:

>Translated_395_residues
MCATPDRPISRRGLLHTGGLATAAIAASSALPPTRAEAATVRRSTRATRDYRTKVVLLGTSGGPIWWRGSTRRGTSSAVV
VGDAQYIVDLGAGALGSVRDAGLLGSADGKNDLHALRGVFLTHLHSDHVSDYPTLVIEGWIGGGLGDAERALQVYGPGRR
DALPHTFPAGRPEPSPVIPDNPGPGTVEMTESLFAAFATDINDRVFDSASPDIRSRIQPHDIALPADVAAPEAGAVPRMS
PFSVYEDDRVRVTATLVDHGQMLPSFGYRFDTEDGSVVISGDTTVSENLVELAADCDVLVHEVIDQAWVEESISALPAPD
EVKAAYKNHMLGAHTTIPQVARVATEAGARTLVLHHFVPGHLPERRWRRVSRNFAGELVVGQDLQRIGVGRRRRG
>Mature_395_residues
MCATPDRPISRRGLLHTGGLATAAIAASSALPPTRAEAATVRRSTRATRDYRTKVVLLGTSGGPIWWRGSTRRGTSSAVV
VGDAQYIVDLGAGALGSVRDAGLLGSADGKNDLHALRGVFLTHLHSDHVSDYPTLVIEGWIGGGLGDAERALQVYGPGRR
DALPHTFPAGRPEPSPVIPDNPGPGTVEMTESLFAAFATDINDRVFDSASPDIRSRIQPHDIALPADVAAPEAGAVPRMS
PFSVYEDDRVRVTATLVDHGQMLPSFGYRFDTEDGSVVISGDTTVSENLVELAADCDVLVHEVIDQAWVEESISALPAPD
EVKAAYKNHMLGAHTTIPQVARVATEAGARTLVLHHFVPGHLPERRWRRVSRNFAGELVVGQDLQRIGVGRRRRG

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR013471 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 42217; Mature: 42217

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCATPDRPISRRGLLHTGGLATAAIAASSALPPTRAEAATVRRSTRATRDYRTKVVLLGT
CCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
SGGPIWWRGSTRRGTSSAVVVGDAQYIVDLGAGALGSVRDAGLLGSADGKNDLHALRGVF
CCCCEEECCCCCCCCCCEEEEECCEEEEEECCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
LTHLHSDHVSDYPTLVIEGWIGGGLGDAERALQVYGPGRRDALPHTFPAGRPEPSPVIPD
HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCC
NPGPGTVEMTESLFAAFATDINDRVFDSASPDIRSRIQPHDIALPADVAAPEAGAVPRMS
CCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PFSVYEDDRVRVTATLVDHGQMLPSFGYRFDTEDGSVVISGDTTVSENLVELAADCDVLV
CCCCCCCCCEEEEEEEECCCCHHHCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHH
HEVIDQAWVEESISALPAPDEVKAAYKNHMLGAHTTIPQVARVATEAGARTLVLHHFVPG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCC
HLPERRWRRVSRNFAGELVVGQDLQRIGVGRRRRG
CCCHHHHHHHHHHCCCCEEECCCHHHHCCCCCCCC
>Mature Secondary Structure
MCATPDRPISRRGLLHTGGLATAAIAASSALPPTRAEAATVRRSTRATRDYRTKVVLLGT
CCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
SGGPIWWRGSTRRGTSSAVVVGDAQYIVDLGAGALGSVRDAGLLGSADGKNDLHALRGVF
CCCCEEECCCCCCCCCCEEEEECCEEEEEECCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
LTHLHSDHVSDYPTLVIEGWIGGGLGDAERALQVYGPGRRDALPHTFPAGRPEPSPVIPD
HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCC
NPGPGTVEMTESLFAAFATDINDRVFDSASPDIRSRIQPHDIALPADVAAPEAGAVPRMS
CCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PFSVYEDDRVRVTATLVDHGQMLPSFGYRFDTEDGSVVISGDTTVSENLVELAADCDVLV
CCCCCCCCCEEEEEEEECCCCHHHCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHH
HEVIDQAWVEESISALPAPDEVKAAYKNHMLGAHTTIPQVARVATEAGARTLVLHHFVPG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCC
HLPERRWRRVSRNFAGELVVGQDLQRIGVGRRRRG
CCCHHHHHHHHHHCCCCEEECCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]