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The map label for this gene is dapA [H]

Identifier: 119714353

GI number: 119714353

Start: 95879

End: 96811

Strand: Direct

Name: dapA [H]

Synonym: Noca_0085

Alternate gene names: 119714353

Gene position: 95879-96811 (Clockwise)

Preceding gene: 119714352

Following gene: 119714354

Centisome position: 1.92

GC content: 69.77

Gene sequence:

>933_bases
ATGACCAGCAATTTCGACCTCGGCGGCGTTGTCGTTGCGACCACCCTGGCGTTCAAGGAGGACTCGTCGGCTCCAGGCGG
CCTCGCGGTCGACTACGACCGGTTCGCCGAGCACTGTGACTGGCTGATCCGCAACGGCGTGCGCGGCGTCGGGCCCAACG
GCTCCCTGGGCGAGTACTCCTCCCTCACGCCCGAGGAGCGCCGCCGCGTCATCCAGGTCGCCGTGGAAGCGGTCGCGGGG
CGTGGCCTCGTGATCGCCGGCGCCCACGGCGTCGGTTGGCACCAGGCGCAGAAGTGGGCCGAGCTCGCCCAGGAGGACGG
GGCGGACGGCGTGCTGCTGCTTCCTCCCATCGTCTACCGGGCCAACGACGAGGAAATCGTCGAGCACTTCAGCAAGGTCG
CCGAGGTCGGGCTGCCGATCATGGCGTACAACAACCCGATCGACACCAAGGTCGACCTCGTCCCGTCGCTGGTGGCCCGA
CTCGCCGAGATCCCCGAGGTCGTCGCGATCAAGGAGTTCTCCGGCGACGTCCGTCGGGTCCTCGAGATCCAGGAGCTGTG
CGACATCGACGTGATCGCCGGTGCCGACGACCTGCTCTTCGAGTCGCTCGTGGTGGGGGCGAAGGGCTGGTTCGCGGGCT
ACCCGAACGCCTTCCCACGCGAGGCGGTCGAGCTCTACGACCTGGTGCAGGAGGGGAAGATCGCGGAGGCCCGGGAGCTC
TACCAGGCGGTCGTCGCGGTGTTCCGCTGGGACTCTCGCACCGAGTTCGTGCAAGCGATCAAGCTCAGCATCGACGTGGC
GGGAGAGAGCTACGGCGGTGCCAGCCGACCCCCGCGCGGCCCGCTCAGCCCTGCCCAGGAGTCCGCGGTCCGCAGCGAGA
CCGAGCGGGCGCTCGCCGCGATCGCTGCCCGCCGTTCGGCGTCGGTGGCCTGA

Upstream 100 bases:

>100_bases
ATCCGGATCGGGGACCTGGCCGCACGCCAGGGCTCCCCGCCACCACACGCCCCACCCACCAGCCCGTCCCAGACACCGAA
CGAAACGGAATGAGATACCG

Downstream 100 bases:

>100_bases
ATGGACGGATCCGAGACCCCGGACGACCGCCAGCCGCCCGCGACGGTGGAGCTGATGGCACGAGCCGCGGCCGACGCATT
CCCCGCCTGGTCGGCGACGC

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTSNFDLGGVVVATTLAFKEDSSAPGGLAVDYDRFAEHCDWLIRNGVRGVGPNGSLGEYSSLTPEERRRVIQVAVEAVAG
RGLVIAGAHGVGWHQAQKWAELAQEDGADGVLLLPPIVYRANDEEIVEHFSKVAEVGLPIMAYNNPIDTKVDLVPSLVAR
LAEIPEVVAIKEFSGDVRRVLEIQELCDIDVIAGADDLLFESLVVGAKGWFAGYPNAFPREAVELYDLVQEGKIAEAREL
YQAVVAVFRWDSRTEFVQAIKLSIDVAGESYGGASRPPRGPLSPAQESAVRSETERALAAIAARRSASVA

Sequences:

>Translated_310_residues
MTSNFDLGGVVVATTLAFKEDSSAPGGLAVDYDRFAEHCDWLIRNGVRGVGPNGSLGEYSSLTPEERRRVIQVAVEAVAG
RGLVIAGAHGVGWHQAQKWAELAQEDGADGVLLLPPIVYRANDEEIVEHFSKVAEVGLPIMAYNNPIDTKVDLVPSLVAR
LAEIPEVVAIKEFSGDVRRVLEIQELCDIDVIAGADDLLFESLVVGAKGWFAGYPNAFPREAVELYDLVQEGKIAEAREL
YQAVVAVFRWDSRTEFVQAIKLSIDVAGESYGGASRPPRGPLSPAQESAVRSETERALAAIAARRSASVA
>Mature_309_residues
TSNFDLGGVVVATTLAFKEDSSAPGGLAVDYDRFAEHCDWLIRNGVRGVGPNGSLGEYSSLTPEERRRVIQVAVEAVAGR
GLVIAGAHGVGWHQAQKWAELAQEDGADGVLLLPPIVYRANDEEIVEHFSKVAEVGLPIMAYNNPIDTKVDLVPSLVARL
AEIPEVVAIKEFSGDVRRVLEIQELCDIDVIAGADDLLFESLVVGAKGWFAGYPNAFPREAVELYDLVQEGKIAEARELY
QAVVAVFRWDSRTEFVQAIKLSIDVAGESYGGASRPPRGPLSPAQESAVRSETERALAAIAARRSASVA

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=297, Percent_Identity=28.2828282828283, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI1786463, Length=251, Percent_Identity=30.6772908366534, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788823, Length=262, Percent_Identity=28.6259541984733, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082415, Length=282, Percent_Identity=28.0141843971631, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789620, Length=280, Percent_Identity=25.3571428571429, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 33354; Mature: 33223

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00131 CARBOXYPEPT_SER_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNFDLGGVVVATTLAFKEDSSAPGGLAVDYDRFAEHCDWLIRNGVRGVGPNGSLGEYS
CCCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SLTPEERRRVIQVAVEAVAGRGLVIAGAHGVGWHQAQKWAELAQEDGADGVLLLPPIVYR
CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCEEEE
ANDEEIVEHFSKVAEVGLPIMAYNNPIDTKVDLVPSLVARLAEIPEVVAIKEFSGDVRRV
CCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHH
LEIQELCDIDVIAGADDLLFESLVVGAKGWFAGYPNAFPREAVELYDLVQEGKIAEAREL
HHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
YQAVVAVFRWDSRTEFVQAIKLSIDVAGESYGGASRPPRGPLSPAQESAVRSETERALAA
HHHHHHHHHCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IAARRSASVA
HHHHHHCCCC
>Mature Secondary Structure 
TSNFDLGGVVVATTLAFKEDSSAPGGLAVDYDRFAEHCDWLIRNGVRGVGPNGSLGEYS
CCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SLTPEERRRVIQVAVEAVAGRGLVIAGAHGVGWHQAQKWAELAQEDGADGVLLLPPIVYR
CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCEEEE
ANDEEIVEHFSKVAEVGLPIMAYNNPIDTKVDLVPSLVARLAEIPEVVAIKEFSGDVRRV
CCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHH
LEIQELCDIDVIAGADDLLFESLVVGAKGWFAGYPNAFPREAVELYDLVQEGKIAEAREL
HHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
YQAVVAVFRWDSRTEFVQAIKLSIDVAGESYGGASRPPRGPLSPAQESAVRSETERALAA
HHHHHHHHHCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IAARRSASVA
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA