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The map label for this gene is ydcN [C]

Identifier: 119714341

GI number: 119714341

Start: 82532

End: 83164

Strand: Direct

Name: ydcN [C]

Synonym: Noca_0073

Alternate gene names: 119714341

Gene position: 82532-83164 (Clockwise)

Preceding gene: 119714339

Following gene: 119714342

Centisome position: 1.66

GC content: 67.14

Gene sequence:

>633_bases
ATGAACGGAAGGACTCCCGCTCAGTCCTTCGTGAGCGGTCCTCTGTCGCGGGCGATCCTGCGGTTGCGCACCCAGCGCGG
CCTCTCCCTGAGCGCCCTGGCTGATCAGTCGGGAGTCGCCAAGGGCACCTTGTCGAATCTCGAACGTGGCGTGGGGAACC
CGACACTCGAGACCATCTTCGCCCTGTCGCGGGGCCTCGGGGTGCCGATCGGTGAGCTCGTCTCGAGTGAGGAGGAGGCG
GCGTCGACGTTCGTCGGCCGCGACGACGCCCGCCACATCAGGGGCGTCGCCGTCGAGCTGATGCTGTACGACCGCTTCGC
CAGCACGGGAAGCGCGACCGAGATCTACGACTTCCGTTGCCTGCCGGGGGACCGGCAGGTGTCACGTGGGCATCCGGGCG
TGGAGCACATCGTGGTCAAGCAGGGGAGGTTGCTCACGGGCCCGACCTCGTCGCCGATCGAGGTCGGGCCGGGTGACTAC
GTGTCCTTTCCGTCGTGGGGCGATCACGCCTACGAGGCGCTTGATGAGGTGGTCGAGGGATTCCTCGTCATCCACTATCC
GAACCCGGCGGCACCCTCTGTCGCGATCAAGGTCGAGTCGCTGGACTCACACGCCGACCGGAGGAAGCCGTGA

Upstream 100 bases:

>100_bases
AATCCGCTACCGTGAGGGTAGAACGGCGGTAGGCGGGAGGGGGAACCTCACGCCGGCCGTTTGGCAGCAGTCCGGTGTCG
ACGGCGATGAGGTTATTGAA

Downstream 100 bases:

>100_bases
GCGGCGCGGTGCCCACCGACCCGGGAACAGCGGCAGACCGAGCGGCGATCCGGCGACTGCTGGAGTCGCATCTGGAGTCG
TGGAACCGGGGGGATCTCGA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Regulatory Protein; Transcriptional Regulator XRE Family Protein; Transcriptional Regulator Cro/CI Family Protein; Helix-Turn-Helix Protein

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNGRTPAQSFVSGPLSRAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIFALSRGLGVPIGELVSSEEEA
ASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRCLPGDRQVSRGHPGVEHIVVKQGRLLTGPTSSPIEVGPGDY
VSFPSWGDHAYEALDEVVEGFLVIHYPNPAAPSVAIKVESLDSHADRRKP

Sequences:

>Translated_210_residues
MNGRTPAQSFVSGPLSRAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIFALSRGLGVPIGELVSSEEEA
ASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRCLPGDRQVSRGHPGVEHIVVKQGRLLTGPTSSPIEVGPGDY
VSFPSWGDHAYEALDEVVEGFLVIHYPNPAAPSVAIKVESLDSHADRRKP
>Mature_210_residues
MNGRTPAQSFVSGPLSRAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIFALSRGLGVPIGELVSSEEEA
ASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRCLPGDRQVSRGHPGVEHIVVKQGRLLTGPTSSPIEVGPGDY
VSFPSWGDHAYEALDEVVEGFLVIHYPNPAAPSVAIKVESLDSHADRRKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=176, Percent_Identity=29.5454545454545, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22477; Mature: 22477

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGRTPAQSFVSGPLSRAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIF
CCCCCHHHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHH
ALSRGLGVPIGELVSSEEEAASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRC
HHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
LPGDRQVSRGHPGVEHIVVKQGRLLTGPTSSPIEVGPGDYVSFPSWGDHAYEALDEVVEG
CCCCCCCCCCCCCHHHEEEECCEEEECCCCCCCEECCCCEECCCCCCCHHHHHHHHHHHC
FLVIHYPNPAAPSVAIKVESLDSHADRRKP
EEEEECCCCCCCEEEEEEECCCCCHHCCCC
>Mature Secondary Structure
MNGRTPAQSFVSGPLSRAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIF
CCCCCHHHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHH
ALSRGLGVPIGELVSSEEEAASTFVGRDDARHIRGVAVELMLYDRFASTGSATEIYDFRC
HHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
LPGDRQVSRGHPGVEHIVVKQGRLLTGPTSSPIEVGPGDYVSFPSWGDHAYEALDEVVEG
CCCCCCCCCCCCCHHHEEEECCEEEECCCCCCCEECCCCEECCCCCCCHHHHHHHHHHHC
FLVIHYPNPAAPSVAIKVESLDSHADRRKP
EEEEECCCCCCCEEEEEEECCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA