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The map label for this gene is araQ [H]

Identifier: 119714315

GI number: 119714315

Start: 49062

End: 49934

Strand: Direct

Name: araQ [H]

Synonym: Noca_0043

Alternate gene names: 119714315

Gene position: 49062-49934 (Clockwise)

Preceding gene: 119714314

Following gene: 119714316

Centisome position: 0.98

GC content: 64.83

Gene sequence:

>873_bases
GTGAGTACCCGCCGGCCCGCGCGCCCGGTCCGCGAAACGCCGCGGACCTGGCTCTCGAAGGCGGTGACCTACGTCCTGCT
GACCCTGGGCGCCGTGGTCATCCTGGGCCCGTTCCTGTGGATGGTCCGGTCCGTGATCACGCCGAACAGCGTGCTGTACT
CGCGTGGGGGCGGCGGGGTGATCCCGCGGCACTTCACCCTCGACCACATCACCGGCGCGTTCACCGAAGGCATCCAGCCG
TTCGACGTGTACTTCGTCAACAGCCTCATCGTCACGGCCATCGCCGTCGTCAGCAACGTCTTCTTCTGCGGCCTGGCCGG
CTTCGCCCTCGCCCGCTTCGAGTTCGTGGGACGGCGTGCGTTGCTGATCGTCATCGTCCTCATGCTGGCCATCCCGATCG
AGTCGCGAATCATCCCCTTGTACATCCTCGCGTCTCGCTCTGGCTTCTCGAACACCTACTTCGGCATCGCTCTGCCACTG
CTCGTGACATCGCTCGGCATCTTCCTCATGCGCCAGTACGTGATGACCATCCCCAGGGAGATCGACGAGGCTGCGACTGT
CGACGGGTGTTCGGCGTGGCGGTTGTACTGGCAGATCATCTTCCCGATCTGCCGCCCCGTCATCGCGGCCATCGCGATCT
TCACCTTCATCACCGCCTGGAACGACTTCCTCTGGCCGCTGGTGATCACCCAGACCCAGGACATGCAGACGTTGCCGGTG
GCGGCCGCCAACCTGGCGGTGGTCAAGGATCAGCTGCGGTGGGGCACCCTGCTGGCGTTCTCACTGCTCTCGGTGCTGCC
CGTGCTGATCTTCTACCTGTTCATGCAGCGCCAGTTCATGGCCGGGATCACCGGGGGAGCCGTCAAGGAGTAG

Upstream 100 bases:

>100_bases
GCGCCATCACCGGCGCCCTTTCGCTGATCATCTTCGCGATCGCGGGCCTCCAGTTCTGGTTCTTCAACCGAAGGAGCGTC
GAGGGGTGAGCATCCTTCCC

Downstream 100 bases:

>100_bases
AGCGCAACGCGCCAGAGAGGATCCATGAATGCACGTAACCTGGACCGCCGACGGACACGTCGCCCGCGTCGCGCTCTGCC
GACCGCCGGTCAACGCGTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSTRRPARPVRETPRTWLSKAVTYVLLTLGAVVILGPFLWMVRSVITPNSVLYSRGGGGVIPRHFTLDHITGAFTEGIQP
FDVYFVNSLIVTAIAVVSNVFFCGLAGFALARFEFVGRRALLIVIVLMLAIPIESRIIPLYILASRSGFSNTYFGIALPL
LVTSLGIFLMRQYVMTIPREIDEAATVDGCSAWRLYWQIIFPICRPVIAAIAIFTFITAWNDFLWPLVITQTQDMQTLPV
AAANLAVVKDQLRWGTLLAFSLLSVLPVLIFYLFMQRQFMAGITGGAVKE

Sequences:

>Translated_290_residues
MSTRRPARPVRETPRTWLSKAVTYVLLTLGAVVILGPFLWMVRSVITPNSVLYSRGGGGVIPRHFTLDHITGAFTEGIQP
FDVYFVNSLIVTAIAVVSNVFFCGLAGFALARFEFVGRRALLIVIVLMLAIPIESRIIPLYILASRSGFSNTYFGIALPL
LVTSLGIFLMRQYVMTIPREIDEAATVDGCSAWRLYWQIIFPICRPVIAAIAIFTFITAWNDFLWPLVITQTQDMQTLPV
AAANLAVVKDQLRWGTLLAFSLLSVLPVLIFYLFMQRQFMAGITGGAVKE
>Mature_289_residues
STRRPARPVRETPRTWLSKAVTYVLLTLGAVVILGPFLWMVRSVITPNSVLYSRGGGGVIPRHFTLDHITGAFTEGIQPF
DVYFVNSLIVTAIAVVSNVFFCGLAGFALARFEFVGRRALLIVIVLMLAIPIESRIIPLYILASRSGFSNTYFGIALPLL
VTSLGIFLMRQYVMTIPREIDEAATVDGCSAWRLYWQIIFPICRPVIAAIAIFTFITAWNDFLWPLVITQTQDMQTLPVA
AANLAVVKDQLRWGTLLAFSLLSVLPVLIFYLFMQRQFMAGITGGAVKE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=274, Percent_Identity=29.5620437956204, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787571, Length=279, Percent_Identity=29.3906810035842, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790464, Length=251, Percent_Identity=26.6932270916335, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32241; Mature: 32110

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRRPARPVRETPRTWLSKAVTYVLLTLGAVVILGPFLWMVRSVITPNSVLYSRGGGGV
CCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCC
IPRHFTLDHITGAFTEGIQPFDVYFVNSLIVTAIAVVSNVFFCGLAGFALARFEFVGRRA
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIVIVLMLAIPIESRIIPLYILASRSGFSNTYFGIALPLLVTSLGIFLMRQYVMTIPRE
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDEAATVDGCSAWRLYWQIIFPICRPVIAAIAIFTFITAWNDFLWPLVITQTQDMQTLPV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHCCH
AAANLAVVKDQLRWGTLLAFSLLSVLPVLIFYLFMQRQFMAGITGGAVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
STRRPARPVRETPRTWLSKAVTYVLLTLGAVVILGPFLWMVRSVITPNSVLYSRGGGGV
CCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCC
IPRHFTLDHITGAFTEGIQPFDVYFVNSLIVTAIAVVSNVFFCGLAGFALARFEFVGRRA
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIVIVLMLAIPIESRIIPLYILASRSGFSNTYFGIALPLLVTSLGIFLMRQYVMTIPRE
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDEAATVDGCSAWRLYWQIIFPICRPVIAAIAIFTFITAWNDFLWPLVITQTQDMQTLPV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHCCH
AAANLAVVKDQLRWGTLLAFSLLSVLPVLIFYLFMQRQFMAGITGGAVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]