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The map label for this gene is yfdE [H]

Identifier: 119714311

GI number: 119714311

Start: 43915

End: 45135

Strand: Direct

Name: yfdE [H]

Synonym: Noca_0039

Alternate gene names: 119714311

Gene position: 43915-45135 (Clockwise)

Preceding gene: 119714307

Following gene: 119714312

Centisome position: 0.88

GC content: 71.33

Gene sequence:

>1221_bases
ATGGACGAGCGTCCGGGGGAGCTGCTGCCGTTGTCGGGGGTGCGGGTGGTGGACCTGACCCGGGCGTTGTCGGGTCCGTT
CTGCACGATGCTGCTGGGCGACCAGGGCGCCGAGGTGGTCAAGATCGAGCGGCCGGTGGTCGGGGACGACACCCGGCGCC
AGTCCAACCCGATGGTGGGTACGGAGAACTCCGCGTTCTTGGCGGTCAACCGCAACAAGCGCAGCGTGGCGGTCGACCTG
CGCGCCGAGGCGGGGGTCGAGGTGGTGCGGCGGCTGGTCGCGGTCAGCGACGTGGTCGTGGAGAACTTCCGGCCCGGCAA
GGCCGAGCAGATGGGGCTGGGCTACGAGCAGCTGCGCGAGCTCAACCCGGGGCTGGTCTACTGCTCGATCTCGGGGTGGG
GCAGCGACGGGCCCTACGCCGCGCGGGGTGGGTACGCCTCGACCGCCGAGGCCGCCGGCGGGCTGATGAGCGTCACCGGC
GAGCGCGGCCGGGGCCCGGTCAAGGTCGGGGTCTCCATCGTGGACTCCCTGACCGGCCTGTACGCCAAGGACGCCATCAC
CGCCGCCCTCCTGGCCCGCGTCCGCACCGGCGTGGGCCAGAAGGTCGAGACCTCACTGCTGGAGTCGACCGTCTCCATCC
TGTCGATGTCGGCCTACGCCTACCTCCTCGGCGGCGTCGTCGCCGGCCGCTGGGGCTCCGAGCACCAGTGGCACGTCCCC
TGGAAGGCCTTCCCCACCGTCGACGGGTTCCTGGTCATCGCCACCAACAACCAGGAGCAGTGGCGCAAGATCTGCGTGGG
CATCGAGCGGCCCGACCTGCTCGAGGACCCCCGGTTCACCACCATGGCCGACCGCGCCGCGCACCGCGAGATCCTCTACG
CCCTCCTCGACGAGGTCTTCGCCACCCGCACCACCCACGACTGGGTCGCGCGCCTGGACGCCGTCGGCGCCGCCGCCGCC
CCCGTCAACACCATCGACCAGGTCTTCGCCGACCCCCAGGTCCTGGCCCGCGACATGCTCCAGAGCGTCGAACACCCCAC
CCTGGGCCCGATCGCCCAGGTCGGCCACGCCCAGAAGCTCCACGGCACCCCCCACCAGATCACCCTCCCCCCGCCCCTGC
TCGGCCAGCACACCCGCGAGGTCCTCACCGACCTCGGCGGCTACACCCCCGACGAGATCGACGAGCTCATCAGCGGTCGA
GTAATTCCTGCAAACTGTTGA

Upstream 100 bases:

>100_bases
ACGTCGTCGTCGAGCGGTGTCATGGTCTCCTCCTGGGCCGGACCCTAGCGAAGACTGTAGACAATTTGCAACACTGGTGT
TCGAAGAGAGGGGGTCGGCC

Downstream 100 bases:

>100_bases
CAGAAAGCAGTCCGCGTCCCTTAGATGGGTCCCGGGCCGCCCGTGACGGCGGTCACATGCCCGTCGGATCCGACCAATGA
GGACTGTCTTGAGCACCTAC

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MDERPGELLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVGTENSAFLAVNRNKRSVAVDL
RAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRELNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTG
ERGRGPVKVGVSIVDSLTGLYAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWHVP
WKAFPTVDGFLVIATNNQEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVFATRTTHDWVARLDAVGAAAA
PVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKLHGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELISGR
VIPANC

Sequences:

>Translated_406_residues
MDERPGELLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVGTENSAFLAVNRNKRSVAVDL
RAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRELNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTG
ERGRGPVKVGVSIVDSLTGLYAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWHVP
WKAFPTVDGFLVIATNNQEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVFATRTTHDWVARLDAVGAAAA
PVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKLHGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELISGR
VIPANC
>Mature_406_residues
MDERPGELLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVGTENSAFLAVNRNKRSVAVDL
RAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRELNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTG
ERGRGPVKVGVSIVDSLTGLYAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWHVP
WKAFPTVDGFLVIATNNQEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVFATRTTHDWVARLDAVGAAAA
PVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKLHGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELISGR
VIPANC

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=43.5114503816794, Blast_Score=348, Evalue=7e-96,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=40.8114558472554, Blast_Score=334, Evalue=1e-91,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=38.4223918575064, Blast_Score=291, Evalue=1e-78,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=36.2768496420048, Blast_Score=275, Evalue=6e-74,
Organism=Homo sapiens, GI42794625, Length=403, Percent_Identity=29.0322580645161, Blast_Score=145, Evalue=9e-35,
Organism=Homo sapiens, GI266456254, Length=403, Percent_Identity=29.0322580645161, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266458393, Length=209, Percent_Identity=34.9282296650718, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=209, Percent_Identity=34.9282296650718, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=37.956204379562, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=37.956204379562, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI87082093, Length=373, Percent_Identity=32.7077747989276, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=31.566265060241, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1786222, Length=416, Percent_Identity=25.2403846153846, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=326, Percent_Identity=26.6871165644172, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=43.21608040201, Blast_Score=330, Evalue=9e-91,
Organism=Drosophila melanogaster, GI24585488, Length=345, Percent_Identity=28.1159420289855, Blast_Score=118, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43683; Mature: 43683

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERPGELLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVG
CCCCCCCEECCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
TENSAFLAVNRNKRSVAVDLRAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRE
CCCCEEEEEECCCCEEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHH
LNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTGERGRGPVKVGVSIVDSLTGL
CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
YAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWHVP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
WKAFPTVDGFLVIATNNQEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVF
CCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ATRTTHDWVARLDAVGAAAAPVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKL
HHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHH
HGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELISGRVIPANC
CCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDERPGELLPLSGVRVVDLTRALSGPFCTMLLGDQGAEVVKIERPVVGDDTRRQSNPMVG
CCCCCCCEECCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
TENSAFLAVNRNKRSVAVDLRAEAGVEVVRRLVAVSDVVVENFRPGKAEQMGLGYEQLRE
CCCCEEEEEECCCCEEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHH
LNPGLVYCSISGWGSDGPYAARGGYASTAEAAGGLMSVTGERGRGPVKVGVSIVDSLTGL
CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
YAKDAITAALLARVRTGVGQKVETSLLESTVSILSMSAYAYLLGGVVAGRWGSEHQWHVP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
WKAFPTVDGFLVIATNNQEQWRKICVGIERPDLLEDPRFTTMADRAAHREILYALLDEVF
CCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ATRTTHDWVARLDAVGAAAAPVNTIDQVFADPQVLARDMLQSVEHPTLGPIAQVGHAQKL
HHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHH
HGTPHQITLPPPLLGQHTREVLTDLGGYTPDEIDELISGRVIPANC
CCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]