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The map label for this gene is ydhC [H]

Identifier: 119714307

GI number: 119714307

Start: 39113

End: 39805

Strand: Direct

Name: ydhC [H]

Synonym: Noca_0035

Alternate gene names: 119714307

Gene position: 39113-39805 (Clockwise)

Preceding gene: 119714306

Following gene: 119714311

Centisome position: 0.78

GC content: 69.55

Gene sequence:

>693_bases
ATGACGACCCCGACCGAGGTCCACGACGACAAGCTGTTCCACCAGCCGCCCCTGCGAGAGCGTGTCCGGGTCCGCCTCGA
GCGGATGATCATCGACGGGACCTTCGAGCCGGGCGCGCATCTGGTCGAGACCGACCTCGCACAGCGCCTCGGCGTGAGCC
GGGGGCCGATCCGGGAAGCGTTGTACCAGCTCCAGCTGCAGGGGTGGGTCGATCTGAGGCCTCGTCAAGGGGCGTTCGTC
CACCAGCCCTCGGTCGAGGAGGTGGACCAGTTCTTCCAGGTCCGTGCCCTGCTGGAGTCCGAGATCTCCTCCCTGGTGGC
CGGGCACGTGACGGCGGCCGACGTCGACGCTCTGCGTGCGATGATCGAGGTGGCGAATCGGCATATCGCGGAGGGCAACG
TGGCAGCCCTGGTCGCCGCCAACGCCGAGTTCCACGGCTACATCCACCGTCTCGCCGGCAACCCCGTCCTGGTGGACCTG
GTCCAGATGCTCGACAAGAGGCTGCGGTGGTACTTCTCCGCCGTCACGATGGAGCGCGCCGGTGACGCGTGGCACGAACA
CGCCGCCCTGGTCGACGCCCTCGCCGAGGGCGACCGCGCACGGGCCGTGGCCCTGACGCGCTCGCACAACGAGCGCACCC
GCTCGGCCTACCTCACGCACCGGCGGGTGCTCCAGGCAGCGGACGAAGACTGA

Upstream 100 bases:

>100_bases
CAAGAGACAACTGGGTCTCGCGGGCGGCCGTGACGTCGCTACCTCAGGGCGGTCCGGGCCATGGGCCCACCCGCCGACGT
GTGACAAGGGACTGCGAACG

Downstream 100 bases:

>100_bases
AACCCGGTCCGGGTCGCCGCGGGCTCAGGAGGTCTGGAACATCTCCGAGAGCCGGCCGGACGCGGTGATGAGGTCCGGGT
CGGTGACGACGTCGACGACG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTTPTEVHDDKLFHQPPLRERVRVRLERMIIDGTFEPGAHLVETDLAQRLGVSRGPIREALYQLQLQGWVDLRPRQGAFV
HQPSVEEVDQFFQVRALLESEISSLVAGHVTAADVDALRAMIEVANRHIAEGNVAALVAANAEFHGYIHRLAGNPVLVDL
VQMLDKRLRWYFSAVTMERAGDAWHEHAALVDALAEGDRARAVALTRSHNERTRSAYLTHRRVLQAADED

Sequences:

>Translated_230_residues
MTTPTEVHDDKLFHQPPLRERVRVRLERMIIDGTFEPGAHLVETDLAQRLGVSRGPIREALYQLQLQGWVDLRPRQGAFV
HQPSVEEVDQFFQVRALLESEISSLVAGHVTAADVDALRAMIEVANRHIAEGNVAALVAANAEFHGYIHRLAGNPVLVDL
VQMLDKRLRWYFSAVTMERAGDAWHEHAALVDALAEGDRARAVALTRSHNERTRSAYLTHRRVLQAADED
>Mature_229_residues
TTPTEVHDDKLFHQPPLRERVRVRLERMIIDGTFEPGAHLVETDLAQRLGVSRGPIREALYQLQLQGWVDLRPRQGAFVH
QPSVEEVDQFFQVRALLESEISSLVAGHVTAADVDALRAMIEVANRHIAEGNVAALVAANAEFHGYIHRLAGNPVLVDLV
QMLDKRLRWYFSAVTMERAGDAWHEHAALVDALAEGDRARAVALTRSHNERTRSAYLTHRRVLQAADED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=171, Percent_Identity=24.5614035087719, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789621, Length=219, Percent_Identity=26.9406392694064, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25871; Mature: 25739

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPTEVHDDKLFHQPPLRERVRVRLERMIIDGTFEPGAHLVETDLAQRLGVSRGPIREA
CCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHH
LYQLQLQGWVDLRPRQGAFVHQPSVEEVDQFFQVRALLESEISSLVAGHVTAADVDALRA
HHHHHHCCCEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MIEVANRHIAEGNVAALVAANAEFHGYIHRLAGNPVLVDLVQMLDKRLRWYFSAVTMERA
HHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GDAWHEHAALVDALAEGDRARAVALTRSHNERTRSAYLTHRRVLQAADED
CCHHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTPTEVHDDKLFHQPPLRERVRVRLERMIIDGTFEPGAHLVETDLAQRLGVSRGPIREA
CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHH
LYQLQLQGWVDLRPRQGAFVHQPSVEEVDQFFQVRALLESEISSLVAGHVTAADVDALRA
HHHHHHCCCEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MIEVANRHIAEGNVAALVAANAEFHGYIHRLAGNPVLVDLVQMLDKRLRWYFSAVTMERA
HHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GDAWHEHAALVDALAEGDRARAVALTRSHNERTRSAYLTHRRVLQAADED
CCHHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]