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The map label for this gene is yagE [C]

Identifier: 119714305

GI number: 119714305

Start: 36843

End: 37760

Strand: Direct

Name: yagE [C]

Synonym: Noca_0033

Alternate gene names: 119714305

Gene position: 36843-37760 (Clockwise)

Preceding gene: 119714304

Following gene: 119714306

Centisome position: 0.74

GC content: 72.77

Gene sequence:

>918_bases
ATGAAGCCCGAGGAGCTCAGACCCCACCTGGCGGGCGTCGCGTCGGTGGCGATCACGCCGTTCGACGAGGACCGGCGCGT
GGACGAGCGGGGGACGCGCGCGGTGGTCGAGTACCTCGACCAGGGCGGCACCGACACCCTGGTGGTGTGCGGCGGCACCG
GGGAGTTCTACGCCCTCACGCCTGCGGAGCGTCGGCAGGTGGTCGAGGTCGCCGCGGCCGCCGTCCAGCGTGCGCCGCTC
GTCGTGTCCGTGGGACTCGACGCGGTCGGCGCGGCCGAGGCCGCCCGGCACGCCGAGGACGCGGGGGCGGCCGGCATCAT
GGTCCACCAGCCGATCCATCCCTACACCCACCCCGACGGCCTGCGACGGTACTACGACGAGATCTGCTCAGCAGTCTCCA
TCGGTGTGGTCGCGTACGTCCGAGACCCGCGCGTGGGCGCCGATCTGCTCGGCGACGTCCTGGCCCACGACAACGTCGTC
GCGGTGAAGTACGCCGTCAACGACGTCCGTCGGTTCGCCAACCTGAGGCGTGACACTCCTCACAGCGGCACCGTCGAGTG
GGTCTGCGGGAGCGCAGAGGCGTGGGCTCCCTTCTTCTGGGTGGCCGGCGCGACCGGGTTCACCTCCGGGCTGGCGAACT
TCGCGATCGAGGAGGCGCTCGGCATGCGCGCCGCCCTCGTGTCGGGCGACGTGGAGCGGATCCGTGCGACGTGGGAGCGC
CTGGCCGGCGTCGAGGACCTGCGCTCGCGCGGGGACGACGCGAACAACATCGCGGTCCTCAAGGCCGGGACCTGCCGGCT
CGGTCTGACCACGGCGGTGGTGCGGCCGCCGCTCCGGCCGCTGCCGGAGGACCACGACGCGGAGCTGGGGCTCATCCTCG
AGGGATGGAAGAACTCGCCACGACCGGGGGCCGGGTGA

Upstream 100 bases:

>100_bases
GCCAACATCGTGGTGACGGCCCCGGCGGGCGAGATGGAGTTCACGACCGCGCCCGTCCCGACCGCGACGACCGTGGCCTA
GTGCCGCCGAAGGAGACCTG

Downstream 100 bases:

>100_bases
GCGGGAGCCCGCGCCGACCCCGTGTCGGGGTCGTGGGCGGCGGGATCGTGGGCGCGGCCGTCGCGCGCGAGCTGCTCGCC
CGGTACGACGCCGAGGTCGT

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKPEELRPHLAGVASVAITPFDEDRRVDERGTRAVVEYLDQGGTDTLVVCGGTGEFYALTPAERRQVVEVAAAAVQRAPL
VVSVGLDAVGAAEAARHAEDAGAAGIMVHQPIHPYTHPDGLRRYYDEICSAVSIGVVAYVRDPRVGADLLGDVLAHDNVV
AVKYAVNDVRRFANLRRDTPHSGTVEWVCGSAEAWAPFFWVAGATGFTSGLANFAIEEALGMRAALVSGDVERIRATWER
LAGVEDLRSRGDDANNIAVLKAGTCRLGLTTAVVRPPLRPLPEDHDAELGLILEGWKNSPRPGAG

Sequences:

>Translated_305_residues
MKPEELRPHLAGVASVAITPFDEDRRVDERGTRAVVEYLDQGGTDTLVVCGGTGEFYALTPAERRQVVEVAAAAVQRAPL
VVSVGLDAVGAAEAARHAEDAGAAGIMVHQPIHPYTHPDGLRRYYDEICSAVSIGVVAYVRDPRVGADLLGDVLAHDNVV
AVKYAVNDVRRFANLRRDTPHSGTVEWVCGSAEAWAPFFWVAGATGFTSGLANFAIEEALGMRAALVSGDVERIRATWER
LAGVEDLRSRGDDANNIAVLKAGTCRLGLTTAVVRPPLRPLPEDHDAELGLILEGWKNSPRPGAG
>Mature_305_residues
MKPEELRPHLAGVASVAITPFDEDRRVDERGTRAVVEYLDQGGTDTLVVCGGTGEFYALTPAERRQVVEVAAAAVQRAPL
VVSVGLDAVGAAEAARHAEDAGAAGIMVHQPIHPYTHPDGLRRYYDEICSAVSIGVVAYVRDPRVGADLLGDVLAHDNVV
AVKYAVNDVRRFANLRRDTPHSGTVEWVCGSAEAWAPFFWVAGATGFTSGLANFAIEEALGMRAALVSGDVERIRATWER
LAGVEDLRSRGDDANNIAVLKAGTCRLGLTTAVVRPPLRPLPEDHDAELGLILEGWKNSPRPGAG

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1786463, Length=290, Percent_Identity=26.2068965517241, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082415, Length=232, Percent_Identity=28.0172413793103, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789620, Length=300, Percent_Identity=26, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.41 [H]

Molecular weight: Translated: 32559; Mature: 32559

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPEELRPHLAGVASVAITPFDEDRRVDERGTRAVVEYLDQGGTDTLVVCGGTGEFYALT
CCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEC
PAERRQVVEVAAAAVQRAPLVVSVGLDAVGAAEAARHAEDAGAAGIMVHQPIHPYTHPDG
HHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHH
LRRYYDEICSAVSIGVVAYVRDPRVGADLLGDVLAHDNVVAVKYAVNDVRRFANLRRDTP
HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
HSGTVEWVCGSAEAWAPFFWVAGATGFTSGLANFAIEEALGMRAALVSGDVERIRATWER
CCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LAGVEDLRSRGDDANNIAVLKAGTCRLGLTTAVVRPPLRPLPEDHDAELGLILEGWKNSP
HCCHHHHHHCCCCCCCEEEEECCCCEECHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
RPGAG
CCCCC
>Mature Secondary Structure
MKPEELRPHLAGVASVAITPFDEDRRVDERGTRAVVEYLDQGGTDTLVVCGGTGEFYALT
CCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEC
PAERRQVVEVAAAAVQRAPLVVSVGLDAVGAAEAARHAEDAGAAGIMVHQPIHPYTHPDG
HHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHH
LRRYYDEICSAVSIGVVAYVRDPRVGADLLGDVLAHDNVVAVKYAVNDVRRFANLRRDTP
HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
HSGTVEWVCGSAEAWAPFFWVAGATGFTSGLANFAIEEALGMRAALVSGDVERIRATWER
CCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LAGVEDLRSRGDDANNIAVLKAGTCRLGLTTAVVRPPLRPLPEDHDAELGLILEGWKNSP
HCCHHHHHHCCCCCCCEEEEECCCCEECHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
RPGAG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA