| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119714284
Identifier: 119714284
GI number: 119714284
Start: 15502
End: 16314
Strand: Direct
Name: 119714284
Synonym: Noca_0012
Alternate gene names: NA
Gene position: 15502-16314 (Clockwise)
Preceding gene: 119714281
Following gene: 119714285
Centisome position: 0.31
GC content: 75.4
Gene sequence:
>813_bases ATGCCGGCCGGCGGTCGCGTGGGGTGGCCCGCTGCGTACGCTGGCGTCGTGCCCCGGACGCTCGCCCCGCGTTTCTGGGC GGCGCATCTGCTCGCCCTGGTGCTGGTCGGCGTCGCCGTCGGCCTGGGCTTCTGGCAGCTCGGCGCCTGGCAGGAGCACC GCCGGATCGAGGCCCGGGACCTGACCCACGCCGAGCCGCTCCCGTTGGCCGAGGTGATCGGACCCGACGACCCGTTCCCG GGGGACAGCATCGGGCAGCCGGTGACCGTGTCGGGCACCTGGGTCGGCGCCGGCACCGTCTACGTCTCCGGCCGTGAGCA CGAAGGTCACGAGGGCTACTGGGTGGTGACGCCGCTGGCGGTCGGGTCGGCCGACGCCCCGGCGCTCCCGGTGGTCCGAG GCTGGGTGGCCGACCCCGCTGACGCCCCCGAGGCGCCGAGCGGGACGGCGGACCTCCAGGCCTGGCTGCAGCCGCCGGAG GGCACCGGGCAGCCCGACGACGACCCCGCCGACGACGTCCTCCCGCAGCTGCGCATCGCCGACGTCATCCAGCACGTCGA CCAGGACCTGTACGGCGCCTACGGCGTCGCGCAGACGCCCGGGCCCGGACTCGAGCCCGCCTCGCTCGAGCAGTTGCCCC AGGTCGACGCGCTCACCGGCCTGCGCAACCTGCTCTACGCGATCGAGTGGTGGTTCTTCGGCGCGTTCGCGCTGTTCATC TGGTGGCGCTGGGTGACCGAGGAGCCCGACGAGGTCGCCGGAGCCGGGGCGGCCGGGGAGCGGGCCGACGAGCCCTCGGG CATCGGTCCGTAG
Upstream 100 bases:
>100_bases CTCGTCGGGAACCGAGCGGCGGTTCACGGGTTGCAGGGGCATCCCGGGCAGCGTAGGCACGGGGGTGGCCGGTGGTCAAG TGGTCAGACCAGATTGACCA
Downstream 100 bases:
>100_bases GGTGGCCTCGTGAAGAACCTGTTCAACACCTACCGGGTGCTCGCGACGATCGTCGGGGTGCTGCTCGCCTTCGCCTCGCT GGTCGCCGCGCCGCTGAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MPAGGRVGWPAAYAGVVPRTLAPRFWAAHLLALVLVGVAVGLGFWQLGAWQEHRRIEARDLTHAEPLPLAEVIGPDDPFP GDSIGQPVTVSGTWVGAGTVYVSGREHEGHEGYWVVTPLAVGSADAPALPVVRGWVADPADAPEAPSGTADLQAWLQPPE GTGQPDDDPADDVLPQLRIADVIQHVDQDLYGAYGVAQTPGPGLEPASLEQLPQVDALTGLRNLLYAIEWWFFGAFALFI WWRWVTEEPDEVAGAGAAGERADEPSGIGP
Sequences:
>Translated_270_residues MPAGGRVGWPAAYAGVVPRTLAPRFWAAHLLALVLVGVAVGLGFWQLGAWQEHRRIEARDLTHAEPLPLAEVIGPDDPFP GDSIGQPVTVSGTWVGAGTVYVSGREHEGHEGYWVVTPLAVGSADAPALPVVRGWVADPADAPEAPSGTADLQAWLQPPE GTGQPDDDPADDVLPQLRIADVIQHVDQDLYGAYGVAQTPGPGLEPASLEQLPQVDALTGLRNLLYAIEWWFFGAFALFI WWRWVTEEPDEVAGAGAAGERADEPSGIGP >Mature_269_residues PAGGRVGWPAAYAGVVPRTLAPRFWAAHLLALVLVGVAVGLGFWQLGAWQEHRRIEARDLTHAEPLPLAEVIGPDDPFPG DSIGQPVTVSGTWVGAGTVYVSGREHEGHEGYWVVTPLAVGSADAPALPVVRGWVADPADAPEAPSGTADLQAWLQPPEG TGQPDDDPADDVLPQLRIADVIQHVDQDLYGAYGVAQTPGPGLEPASLEQLPQVDALTGLRNLLYAIEWWFFGAFALFIW WRWVTEEPDEVAGAGAAGERADEPSGIGP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28646; Mature: 28515
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: PS50895 SURF1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAGGRVGWPAAYAGVVPRTLAPRFWAAHLLALVLVGVAVGLGFWQLGAWQEHRRIEARD CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHH LTHAEPLPLAEVIGPDDPFPGDSIGQPVTVSGTWVGAGTVYVSGREHEGHEGYWVVTPLA CCCCCCCCHHHHCCCCCCCCCCCCCCCEEECEEEEECCEEEEECCCCCCCCCEEEEEEEE VGSADAPALPVVRGWVADPADAPEAPSGTADLQAWLQPPEGTGQPDDDPADDVLPQLRIA ECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH DVIQHVDQDLYGAYGVAQTPGPGLEPASLEQLPQVDALTGLRNLLYAIEWWFFGAFALFI HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH WWRWVTEEPDEVAGAGAAGERADEPSGIGP HHHHHCCCCHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure PAGGRVGWPAAYAGVVPRTLAPRFWAAHLLALVLVGVAVGLGFWQLGAWQEHRRIEARD CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHH LTHAEPLPLAEVIGPDDPFPGDSIGQPVTVSGTWVGAGTVYVSGREHEGHEGYWVVTPLA CCCCCCCCHHHHCCCCCCCCCCCCCCCEEECEEEEECCEEEEECCCCCCCCCEEEEEEEE VGSADAPALPVVRGWVADPADAPEAPSGTADLQAWLQPPEGTGQPDDDPADDVLPQLRIA ECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH DVIQHVDQDLYGAYGVAQTPGPGLEPASLEQLPQVDALTGLRNLLYAIEWWFFGAFALFI HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH WWRWVTEEPDEVAGAGAAGERADEPSGIGP HHHHHCCCCHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA