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The map label for this gene is 119714281

Identifier: 119714281

GI number: 119714281

Start: 12546

End: 13964

Strand: Direct

Name: 119714281

Synonym: Noca_0009

Alternate gene names: NA

Gene position: 12546-13964 (Clockwise)

Preceding gene: 119714280

Following gene: 119714284

Centisome position: 0.25

GC content: 73.01

Gene sequence:

>1419_bases
GTGGCGGACGCCAGTCCGGCTGAGGTGCGCGCGGTGCTCGATGCGCTGGGGAGTGGGCGGGTGTCCAGCATCTTCGAGAA
GCTCGAGCGCGACCAGGCACCGACCCTGCTGACGGCTCCGGCGCAGGTCCGTGGGTTCCGTGTGCGGTTGGATCTGCACG
GGGCCAAGCCTCCGGTGTGGCGGCGGCTGGAGCTGCCCGGCGACCTCAGCCTGCCGCGGGTCCATGCCGCGATCCAGGCG
GCAATGGGGTGGACCAACAGCCACCTGCACCGGTTCCGGACGGGTTGTGATCGCAGCTCGGCGTCGTTCGTCACGCAGTT
CGACGTCGATGAGGGTGACGAGGGCACGCTCGAGGACGACGTGCGGCTCGACCAGCTGCTCGCCGAGAACGGCGACGAGC
TCTGGTACGAGTACGACTTCGGCGACGGCTGGGATCACGTCTTGGTGGTCGAGGAGGTGCTCGAGGAGCCGCCTTCCACC
GTCCGCTGCACGGGAGGACGGTCGGCCTGCCCGCCCGAGGACTGCGGCGGTCTCGGTGGCTACCAGGAGCTGGCCGCCTG
GGTCCGCAGCGGGTACGACGACGGGCAGCTCCCCGACGTCTTCGACGATGCGGAGGACGCCCGCGCCTGGCTGCCGCTCG
ACTGGCACCCGGACGAATTCGAGGTGGAGGACGCCGACGCCGCTGTGGCGGCCGCGGCCGCCGAGCTGGTCGCGGTCAGC
GGCGAACTCGCCGGGCTGGCCGCGCAGCTCGATCGGCACGGCATCTTGCTGTTGCGGCAGGTGCTGAGCCGCCCCTCCTC
CCACGGGCCGATCGAGGTCGCCGACGCCGAGGCCGGCCGGCTGACCGAGACCTACCGGACCTTCCTCGAGGTGATCGGCG
ACGGCGTCGCGCTGACCGCCGCCGGTCACCTCCCGCCCGCCGTCGTCGAGAAGTTCGCCGAGCGCAGCGGCATCGCGGAC
TGGTGGATCCGCAAGGCCAACCGTGAGGACGCCACCCCCCCGGTCGCGAACGTGCGCGCGGCGGTCCGCTTGCTCGGTCT
GGTCAGCGTTCGCAAGGGCCGGCTCGCGCCGACGGCGGCCGCCATCCGATGCCACCAGGACCCGCAGGCGCTGCTGCGCC
ACATCGTCGAACGGCTCCCCGTGGGGACCCAGGAGTGGGAGCGCGAGGCGGGCTGGATGGCTCTCGCGGTGGCCGGCAGC
GGCGTACCGGCCGAGGACTGGCGCGCCGAGATCAGCGAGCTGACGTTCGCTCTCGGGTGGCGCGGCGATCCCGGTGACGA
CTCGCTGCCGTCGCCGCGCAGCAGGACGCTGAGAGTCCTCGACGATCTGGGTGGTGCGGCGCGCCACCCGTGGGGCCGCA
ACGAGGGCGTCGACGCCGCGGTTGCGGCCGTCGCACGCGCGGTCACCCGCCGGGCGTGA

Upstream 100 bases:

>100_bases
ATCGCCATGGCCGCGGTTGAGTCGGGACACCTGCGTGCGCGGTGGTTGACTGTGCGGCGTGGCCGAACCGAACGACCTCC
GAAGCCTGGGGAAGCAGCTG

Downstream 100 bases:

>100_bases
CGGAGCCGGGTCAGAGCCGCTCGCGCGAGTGCAGCGCCCGGACCGTCGGCGAGGTCTCGACGGCCGCCGGGTCGGGGTAC
GTCCCGAACAGCCGGTCGGC

Product: plasmid pRiA4b ORF-3 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MADASPAEVRAVLDALGSGRVSSIFEKLERDQAPTLLTAPAQVRGFRVRLDLHGAKPPVWRRLELPGDLSLPRVHAAIQA
AMGWTNSHLHRFRTGCDRSSASFVTQFDVDEGDEGTLEDDVRLDQLLAENGDELWYEYDFGDGWDHVLVVEEVLEEPPST
VRCTGGRSACPPEDCGGLGGYQELAAWVRSGYDDGQLPDVFDDAEDARAWLPLDWHPDEFEVEDADAAVAAAAAELVAVS
GELAGLAAQLDRHGILLLRQVLSRPSSHGPIEVADAEAGRLTETYRTFLEVIGDGVALTAAGHLPPAVVEKFAERSGIAD
WWIRKANREDATPPVANVRAAVRLLGLVSVRKGRLAPTAAAIRCHQDPQALLRHIVERLPVGTQEWEREAGWMALAVAGS
GVPAEDWRAEISELTFALGWRGDPGDDSLPSPRSRTLRVLDDLGGAARHPWGRNEGVDAAVAAVARAVTRRA

Sequences:

>Translated_472_residues
MADASPAEVRAVLDALGSGRVSSIFEKLERDQAPTLLTAPAQVRGFRVRLDLHGAKPPVWRRLELPGDLSLPRVHAAIQA
AMGWTNSHLHRFRTGCDRSSASFVTQFDVDEGDEGTLEDDVRLDQLLAENGDELWYEYDFGDGWDHVLVVEEVLEEPPST
VRCTGGRSACPPEDCGGLGGYQELAAWVRSGYDDGQLPDVFDDAEDARAWLPLDWHPDEFEVEDADAAVAAAAAELVAVS
GELAGLAAQLDRHGILLLRQVLSRPSSHGPIEVADAEAGRLTETYRTFLEVIGDGVALTAAGHLPPAVVEKFAERSGIAD
WWIRKANREDATPPVANVRAAVRLLGLVSVRKGRLAPTAAAIRCHQDPQALLRHIVERLPVGTQEWEREAGWMALAVAGS
GVPAEDWRAEISELTFALGWRGDPGDDSLPSPRSRTLRVLDDLGGAARHPWGRNEGVDAAVAAVARAVTRRA
>Mature_471_residues
ADASPAEVRAVLDALGSGRVSSIFEKLERDQAPTLLTAPAQVRGFRVRLDLHGAKPPVWRRLELPGDLSLPRVHAAIQAA
MGWTNSHLHRFRTGCDRSSASFVTQFDVDEGDEGTLEDDVRLDQLLAENGDELWYEYDFGDGWDHVLVVEEVLEEPPSTV
RCTGGRSACPPEDCGGLGGYQELAAWVRSGYDDGQLPDVFDDAEDARAWLPLDWHPDEFEVEDADAAVAAAAAELVAVSG
ELAGLAAQLDRHGILLLRQVLSRPSSHGPIEVADAEAGRLTETYRTFLEVIGDGVALTAAGHLPPAVVEKFAERSGIADW
WIRKANREDATPPVANVRAAVRLLGLVSVRKGRLAPTAAAIRCHQDPQALLRHIVERLPVGTQEWEREAGWMALAVAGSG
VPAEDWRAEISELTFALGWRGDPGDDSLPSPRSRTLRVLDDLGGAARHPWGRNEGVDAAVAAVARAVTRRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes plasmid pRia4B ORF-3 in virA region [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012912 [H]

Pfam domain/function: PF07929 PRiA4_ORF3 [H]

EC number: NA

Molecular weight: Translated: 51086; Mature: 50955

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADASPAEVRAVLDALGSGRVSSIFEKLERDQAPTLLTAPAQVRGFRVRLDLHGAKPPVW
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCHHHCEEEEEEEECCCCCCCC
RRLELPGDLSLPRVHAAIQAAMGWTNSHLHRFRTGCDRSSASFVTQFDVDEGDEGTLEDD
EEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHH
VRLDQLLAENGDELWYEYDFGDGWDHVLVVEEVLEEPPSTVRCTGGRSACPPEDCGGLGG
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHCCCCC
YQELAAWVRSGYDDGQLPDVFDDAEDARAWLPLDWHPDEFEVEDADAAVAAAAAELVAVS
HHHHHHHHHCCCCCCCCCCCCCCHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GELAGLAAQLDRHGILLLRQVLSRPSSHGPIEVADAEAGRLTETYRTFLEVIGDGVALTA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE
AGHLPPAVVEKFAERSGIADWWIRKANREDATPPVANVRAAVRLLGLVSVRKGRLAPTAA
CCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
AIRCHQDPQALLRHIVERLPVGTQEWEREAGWMALAVAGSGVPAEDWRAEISELTFALGW
HHEECCCHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
RGDPGDDSLPSPRSRTLRVLDDLGGAARHPWGRNEGVDAAVAAVARAVTRRA
CCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADASPAEVRAVLDALGSGRVSSIFEKLERDQAPTLLTAPAQVRGFRVRLDLHGAKPPVW
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCHHHCEEEEEEEECCCCCCCC
RRLELPGDLSLPRVHAAIQAAMGWTNSHLHRFRTGCDRSSASFVTQFDVDEGDEGTLEDD
EEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHH
VRLDQLLAENGDELWYEYDFGDGWDHVLVVEEVLEEPPSTVRCTGGRSACPPEDCGGLGG
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHCCCCC
YQELAAWVRSGYDDGQLPDVFDDAEDARAWLPLDWHPDEFEVEDADAAVAAAAAELVAVS
HHHHHHHHHCCCCCCCCCCCCCCHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GELAGLAAQLDRHGILLLRQVLSRPSSHGPIEVADAEAGRLTETYRTFLEVIGDGVALTA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE
AGHLPPAVVEKFAERSGIADWWIRKANREDATPPVANVRAAVRLLGLVSVRKGRLAPTAA
CCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
AIRCHQDPQALLRHIVERLPVGTQEWEREAGWMALAVAGSGVPAEDWRAEISELTFALGW
HHEECCCHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
RGDPGDDSLPSPRSRTLRVLDDLGGAARHPWGRNEGVDAAVAAVARAVTRRA
CCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]