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The map label for this gene is ytcJ [H]

Identifier: 119386992

GI number: 119386992

Start: 1462297

End: 1463931

Strand: Direct

Name: ytcJ [H]

Synonym: Pden_4287

Alternate gene names: 119386992

Gene position: 1462297-1463931 (Clockwise)

Preceding gene: 119386985

Following gene: 119386993

Centisome position: 84.52

GC content: 69.05

Gene sequence:

>1635_bases
ATGATCCCGACCGTTTTTTCAGCACGCCGCATCATCACCATGGACCCGTCGCGGCCCGAGGCGACCCATGTGATGGTGTC
CCATGACGGGCGCATCCTCGCCGTCGGCGGCCCCGACATGATGCGCGGCCGGGGCGAGTTGCGCCACGACGACCGTTTCG
CCGACAAGATCCTGATGCCCGGCTTCGTCGAGGGGCACGCCCATATGATGGAGGGCTCGGTCTGGCGCTTTACCTATCTT
GGCCATTACGACCGCGTGGCCCCGGACGGGCGACCGTGGCAGGGCATCACCAGCACCAATGCGCTGGTCGAGCGCCTGCG
CGAACGCGCCGAGGAACTGGGCGACGGTCCCGTCGTCGGTTGGGGCTTCGATCCGCTTTTCGTGCCCGGCGACCGGCTGT
CGCGGCTGGACCTGGACCGGGTCTCGACCACGCGGCCGGTGGTGGTGCTGCATTCGAACATGCACCTGCTGACCGCCAAC
AGCGTGGCGCTGGAACTGGCCGGATACGACGAGAACACCGATATCCCGGGCGTCATCCATACCGAGGACGGCGAGCTGCA
CGGCGAGTTGCACGAGATGGGCGCCATGTTCCCGGTCATGCGCCGGGTCGGCGCCAGCTTCCGCGCCCTTGGCGGCGATC
CCGAGGCGATCTGGAACTTCGCGCGTTCGGCCTGCCGGGCGGGGGTGACGACCTCGACCGACCTGCTGAACGAGCTGGCC
GACGAGACGCTGGCCGACCTGTTCGCCACCACGGCCAAGGACGGCTATCCGCTGCGGCTGGTGCCGATGCTTTCGGCGAT
GGCGCTGCCGCCCGCGGCGGTGGCGGCGCGGGCGCAGGAGTTGCGGGCGCGCTCGACCGACCGGCTGCGGCTGGGCGGGG
TGAAGATCGTCACCGACGGCTCGATCCAGGGCTTCACCGCACAACTGAACGCGCCCGGCTATCATCGCGGCACCGACAAC
GGCATCTGGAACATCGCCCCCGAGGCGCTGAACGCCATGGTGGACGACCTGAACCGCCAGGGCATCCAGATGCATATCCA
TGTCAACGGCGACGGCGCCAGCCTTGCCGCCATCGAGGCGCTGGAGGCGGCGCTGTCCGGGCATTTCCGCCCCGACCACC
GCCACACGTTGCAGCATTGCCAGATGGCCGACCGCGCCCAGCTGCGCCGCATCGCCGCGCTGCAATGCTGCGTCAACCTG
TTCGCCAACCACCTGTATTACTTCGGCGACAAGCATTACGAGATCACCATCGGCCCCGAGCGCGCCTGCCGCATGAACCC
CTGCGCCAGCGCGCTGGAGATGGGCATTCCGCTGGCCATCCATTCCGACGCGCCGATCACGCCGCTGGCACCGCTGGTCA
CCGCCTGGTGCGCGGTCAACCGCCTGACCGACAGCGGCCGGCAGTTGGGCACCTCCGAGCGCATTTCGCTGGACGCCGCG
CTTTACGCCATCACGCTGGGCGCGGCCTATACGCTGAAGCTCGACGGCGAGCTGGGTTCGGTCGAGGTCGGCAAGCGCGC
CGATTTCGCCGTGCTCGAGGACGACCCGCACGCGCTTGGCCCCGAACGTCTGCGCGAGGCGCGGGTCTGGGGCACCGTCT
TCGGCGGCCGGCCGGTCCCGGCCGGATCGTTCTAA

Upstream 100 bases:

>100_bases
CCTCAGGAAAATAGCGGAAATCCCCCGTAATTATGCATTTCACGCAGGATGTTTGTCACGGCTAATCTGCCCGCGAAGCC
GGATCCGACGGAGAAATTGC

Downstream 100 bases:

>100_bases
GCCATGGCCGCCCCGCTTCCGGTCAACATCCTGTGCGGCTATCTGGGGGCCGGCAAGACCACCTTGCTCAACCGGCTCCT
GGAGCGGCAGGACGAGCGCA

Product: amidohydrolase 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MIPTVFSARRIITMDPSRPEATHVMVSHDGRILAVGGPDMMRGRGELRHDDRFADKILMPGFVEGHAHMMEGSVWRFTYL
GHYDRVAPDGRPWQGITSTNALVERLRERAEELGDGPVVGWGFDPLFVPGDRLSRLDLDRVSTTRPVVVLHSNMHLLTAN
SVALELAGYDENTDIPGVIHTEDGELHGELHEMGAMFPVMRRVGASFRALGGDPEAIWNFARSACRAGVTTSTDLLNELA
DETLADLFATTAKDGYPLRLVPMLSAMALPPAAVAARAQELRARSTDRLRLGGVKIVTDGSIQGFTAQLNAPGYHRGTDN
GIWNIAPEALNAMVDDLNRQGIQMHIHVNGDGASLAAIEALEAALSGHFRPDHRHTLQHCQMADRAQLRRIAALQCCVNL
FANHLYYFGDKHYEITIGPERACRMNPCASALEMGIPLAIHSDAPITPLAPLVTAWCAVNRLTDSGRQLGTSERISLDAA
LYAITLGAAYTLKLDGELGSVEVGKRADFAVLEDDPHALGPERLREARVWGTVFGGRPVPAGSF

Sequences:

>Translated_544_residues
MIPTVFSARRIITMDPSRPEATHVMVSHDGRILAVGGPDMMRGRGELRHDDRFADKILMPGFVEGHAHMMEGSVWRFTYL
GHYDRVAPDGRPWQGITSTNALVERLRERAEELGDGPVVGWGFDPLFVPGDRLSRLDLDRVSTTRPVVVLHSNMHLLTAN
SVALELAGYDENTDIPGVIHTEDGELHGELHEMGAMFPVMRRVGASFRALGGDPEAIWNFARSACRAGVTTSTDLLNELA
DETLADLFATTAKDGYPLRLVPMLSAMALPPAAVAARAQELRARSTDRLRLGGVKIVTDGSIQGFTAQLNAPGYHRGTDN
GIWNIAPEALNAMVDDLNRQGIQMHIHVNGDGASLAAIEALEAALSGHFRPDHRHTLQHCQMADRAQLRRIAALQCCVNL
FANHLYYFGDKHYEITIGPERACRMNPCASALEMGIPLAIHSDAPITPLAPLVTAWCAVNRLTDSGRQLGTSERISLDAA
LYAITLGAAYTLKLDGELGSVEVGKRADFAVLEDDPHALGPERLREARVWGTVFGGRPVPAGSF
>Mature_544_residues
MIPTVFSARRIITMDPSRPEATHVMVSHDGRILAVGGPDMMRGRGELRHDDRFADKILMPGFVEGHAHMMEGSVWRFTYL
GHYDRVAPDGRPWQGITSTNALVERLRERAEELGDGPVVGWGFDPLFVPGDRLSRLDLDRVSTTRPVVVLHSNMHLLTAN
SVALELAGYDENTDIPGVIHTEDGELHGELHEMGAMFPVMRRVGASFRALGGDPEAIWNFARSACRAGVTTSTDLLNELA
DETLADLFATTAKDGYPLRLVPMLSAMALPPAAVAARAQELRARSTDRLRLGGVKIVTDGSIQGFTAQLNAPGYHRGTDN
GIWNIAPEALNAMVDDLNRQGIQMHIHVNGDGASLAAIEALEAALSGHFRPDHRHTLQHCQMADRAQLRRIAALQCCVNL
FANHLYYFGDKHYEITIGPERACRMNPCASALEMGIPLAIHSDAPITPLAPLVTAWCAVNRLTDSGRQLGTSERISLDAA
LYAITLGAAYTLKLDGELGSVEVGKRADFAVLEDDPHALGPERLREARVWGTVFGGRPVPAGSF

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 59236; Mature: 59236

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPTVFSARRIITMDPSRPEATHVMVSHDGRILAVGGPDMMRGRGELRHDDRFADKILMP
CCCCCCCCCEEEEECCCCCCCEEEEEECCCEEEEECCHHHHCCCCCCCCCHHHHHHHCCC
GFVEGHAHMMEGSVWRFTYLGHYDRVAPDGRPWQGITSTNALVERLRERAEELGDGPVVG
CCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
WGFDPLFVPGDRLSRLDLDRVSTTRPVVVLHSNMHLLTANSVALELAGYDENTDIPGVIH
CCCCCEECCCCCCCCCCHHHCCCCCCEEEEECCEEEEEECCEEEEEECCCCCCCCCEEEE
TEDGELHGELHEMGAMFPVMRRVGASFRALGGDPEAIWNFARSACRAGVTTSTDLLNELA
CCCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
DETLADLFATTAKDGYPLRLVPMLSAMALPPAAVAARAQELRARSTDRLRLGGVKIVTDG
HHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCEEEEECC
SIQGFTAQLNAPGYHRGTDNGIWNIAPEALNAMVDDLNRQGIQMHIHVNGDGASLAAIEA
CCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
LEAALSGHFRPDHRHTLQHCQMADRAQLRRIAALQCCVNLFANHLYYFGDKHYEITIGPE
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCC
RACRMNPCASALEMGIPLAIHSDAPITPLAPLVTAWCAVNRLTDSGRQLGTSERISLDAA
CCCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCEEHHHH
LYAITLGAAYTLKLDGELGSVEVGKRADFAVLEDDPHALGPERLREARVWGTVFGGRPVP
EEEEEECCEEEEEECCCCCCEECCCCCCEEEECCCCCCCCHHHHHHHHHEEEEECCCCCC
AGSF
CCCC
>Mature Secondary Structure
MIPTVFSARRIITMDPSRPEATHVMVSHDGRILAVGGPDMMRGRGELRHDDRFADKILMP
CCCCCCCCCEEEEECCCCCCCEEEEEECCCEEEEECCHHHHCCCCCCCCCHHHHHHHCCC
GFVEGHAHMMEGSVWRFTYLGHYDRVAPDGRPWQGITSTNALVERLRERAEELGDGPVVG
CCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
WGFDPLFVPGDRLSRLDLDRVSTTRPVVVLHSNMHLLTANSVALELAGYDENTDIPGVIH
CCCCCEECCCCCCCCCCHHHCCCCCCEEEEECCEEEEEECCEEEEEECCCCCCCCCEEEE
TEDGELHGELHEMGAMFPVMRRVGASFRALGGDPEAIWNFARSACRAGVTTSTDLLNELA
CCCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
DETLADLFATTAKDGYPLRLVPMLSAMALPPAAVAARAQELRARSTDRLRLGGVKIVTDG
HHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCEEEEECC
SIQGFTAQLNAPGYHRGTDNGIWNIAPEALNAMVDDLNRQGIQMHIHVNGDGASLAAIEA
CCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
LEAALSGHFRPDHRHTLQHCQMADRAQLRRIAALQCCVNLFANHLYYFGDKHYEITIGPE
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCC
RACRMNPCASALEMGIPLAIHSDAPITPLAPLVTAWCAVNRLTDSGRQLGTSERISLDAA
CCCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCEEHHHH
LYAITLGAAYTLKLDGELGSVEVGKRADFAVLEDDPHALGPERLREARVWGTVFGGRPVP
EEEEEECCEEEEEECCCCCCEECCCCCCEEEECCCCCCCCHHHHHHHHHEEEEECCCCCC
AGSF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]