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The map label for this gene is ykoU [H]

Identifier: 119386891

GI number: 119386891

Start: 1341593

End: 1342585

Strand: Direct

Name: ykoU [H]

Synonym: Pden_4186

Alternate gene names: 119386891

Gene position: 1341593-1342585 (Clockwise)

Preceding gene: 119386879

Following gene: 119386896

Centisome position: 77.54

GC content: 71.1

Gene sequence:

>993_bases
ATGCGGATCGGATGGCCGGCGGCGAACCGCGACCCCGCCGCCGGCGTTGGTCCCGAAAGCAGCAAGGAGCCGACCATGAC
CGAGCGGATCGAGGGTGTGACCATCTCGCATCCCGAGCGGGTGATCTTTGCCGATGCCGGGCCGGGCAAGGCGGGGCTGA
CCAAGGCGGGGCTGACCAAGGCGAGGCTGGCGCGTTACTACCAGCAGATCGCGCCCCTGATGCTGGAAGAGGCCGCGAAC
CGCCCGCTGTCGCTTCTGCGCCTGCCCGACGGGATGGCGGGCGAGCGGTTCTTTCAGAAGCATCCCGGCAAGGGCTTTCC
CAAGGCGATCCGGCAGATGCAGATCACCGAAAGCGACGGCGAAGCCGCGCCCTATGCCTATGTCACCGATGCCGCGGGGC
TGGTCGCCGCCGTGCAGATGGGCACGGTCGAGTTCCATATCTGGCCCGCCCGCCGCGACCGGCTGGAGCGGCCCGACCGG
CTGGTCCTGGACCTCGACCCCGATGAGGGGCTGGGCTTCGATGCGGTGCGCAGCGCCGCCCTGTCGCTGCGCGGCCGGCT
GCTGGACCTGGGGCTTGAGCCCTGGGCGATGCTGACCGGCGGCAAGGGCGTGCATCTGGTGGTCCCGCTGCGCCGCAGCC
TCGGCTGGGACGATCTCAAGCGTTTCGCCCGCGGCTTTGCCGCGCTTTGCGCGCAAGAGGAACCGGATCGCTATACGGTG
GAACTGGCCAAGGCCAGCCGCAGGGGCCGGATCTTCATCGACTGGCTGCGCAACGAGCGCGGCTCGACGGCGGTCGCGCC
CTTTTCGGTGCGCGCCCGGCCCGGCGCGCCGGTGGCGGCCCCGATCGGCTGGGACGAACTGGCCCGGATCAGCACCGCCC
GCGCCTTCGGCATCGCTGCGGCGCAAGAGCGCGGCTGGGCCGGCGTGACGCGGGTGCAACAAAGCCTGACCCGGCCCATG
TTCGAGGCGGTGGAGAAGGCGCTGGCCGGTTGA

Upstream 100 bases:

>100_bases
CTCGGAAAGGTCCAGCGCCGGGGTTTCGCCGCTTTCCTGCAGATGCCGGACCGCCTGCCAGCGCCCGTCGCGGCACACAA
CAGCGGTGACGCTGGGCCGG

Downstream 100 bases:

>100_bases
ACGCCCCCTTCAGCCCTCGATGCGCCGTCCGCTGACGGGATCGAAGAAATGCAGATGCGCCGGATCCGGCACCGCCTCGA
CCCGGTCGCCGCGCGACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MRIGWPAANRDPAAGVGPESSKEPTMTERIEGVTISHPERVIFADAGPGKAGLTKAGLTKARLARYYQQIAPLMLEEAAN
RPLSLLRLPDGMAGERFFQKHPGKGFPKAIRQMQITESDGEAAPYAYVTDAAGLVAAVQMGTVEFHIWPARRDRLERPDR
LVLDLDPDEGLGFDAVRSAALSLRGRLLDLGLEPWAMLTGGKGVHLVVPLRRSLGWDDLKRFARGFAALCAQEEPDRYTV
ELAKASRRGRIFIDWLRNERGSTAVAPFSVRARPGAPVAAPIGWDELARISTARAFGIAAAQERGWAGVTRVQQSLTRPM
FEAVEKALAG

Sequences:

>Translated_330_residues
MRIGWPAANRDPAAGVGPESSKEPTMTERIEGVTISHPERVIFADAGPGKAGLTKAGLTKARLARYYQQIAPLMLEEAAN
RPLSLLRLPDGMAGERFFQKHPGKGFPKAIRQMQITESDGEAAPYAYVTDAAGLVAAVQMGTVEFHIWPARRDRLERPDR
LVLDLDPDEGLGFDAVRSAALSLRGRLLDLGLEPWAMLTGGKGVHLVVPLRRSLGWDDLKRFARGFAALCAQEEPDRYTV
ELAKASRRGRIFIDWLRNERGSTAVAPFSVRARPGAPVAAPIGWDELARISTARAFGIAAAQERGWAGVTRVQQSLTRPM
FEAVEKALAG
>Mature_330_residues
MRIGWPAANRDPAAGVGPESSKEPTMTERIEGVTISHPERVIFADAGPGKAGLTKAGLTKARLARYYQQIAPLMLEEAAN
RPLSLLRLPDGMAGERFFQKHPGKGFPKAIRQMQITESDGEAAPYAYVTDAAGLVAAVQMGTVEFHIWPARRDRLERPDR
LVLDLDPDEGLGFDAVRSAALSLRGRLLDLGLEPWAMLTGGKGVHLVVPLRRSLGWDDLKRFARGFAALCAQEEPDRYTV
ELAKASRRGRIFIDWLRNERGSTAVAPFSVRARPGAPVAAPIGWDELARISTARAFGIAAAQERGWAGVTRVQQSLTRPM
FEAVEKALAG

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 35968; Mature: 35968

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGWPAANRDPAAGVGPESSKEPTMTERIEGVTISHPERVIFADAGPGKAGLTKAGLTK
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEECCCCEEEEEECCCCCCCCCHHCHHH
ARLARYYQQIAPLMLEEAANRPLSLLRLPDGMAGERFFQKHPGKGFPKAIRQMQITESDG
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHEECCCCCC
EAAPYAYVTDAAGLVAAVQMGTVEFHIWPARRDRLERPDRLVLDLDPDEGLGFDAVRSAA
CCCCEEEEEHHHHHHHHHEECEEEEEEECCHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
LSLRGRLLDLGLEPWAMLTGGKGVHLVVPLRRSLGWDDLKRFARGFAALCAQEEPDRYTV
HHHHHHHEECCCCCEEEEECCCCEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCCEEE
ELAKASRRGRIFIDWLRNERGSTAVAPFSVRARPGAPVAAPIGWDELARISTARAFGIAA
EEECCCCCCCEEEEEECCCCCCEEECCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHH
AQERGWAGVTRVQQSLTRPMFEAVEKALAG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIGWPAANRDPAAGVGPESSKEPTMTERIEGVTISHPERVIFADAGPGKAGLTKAGLTK
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEECCCCEEEEEECCCCCCCCCHHCHHH
ARLARYYQQIAPLMLEEAANRPLSLLRLPDGMAGERFFQKHPGKGFPKAIRQMQITESDG
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHEECCCCCC
EAAPYAYVTDAAGLVAAVQMGTVEFHIWPARRDRLERPDRLVLDLDPDEGLGFDAVRSAA
CCCCEEEEEHHHHHHHHHEECEEEEEEECCHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
LSLRGRLLDLGLEPWAMLTGGKGVHLVVPLRRSLGWDDLKRFARGFAALCAQEEPDRYTV
HHHHHHHEECCCCCEEEEECCCCEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCCEEE
ELAKASRRGRIFIDWLRNERGSTAVAPFSVRARPGAPVAAPIGWDELARISTARAFGIAA
EEECCCCCCCEEEEEECCCCCCEEECCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHH
AQERGWAGVTRVQQSLTRPMFEAVEKALAG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]