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The map label for this gene is ydhC [H]

Identifier: 119386651

GI number: 119386651

Start: 1081609

End: 1082244

Strand: Direct

Name: ydhC [H]

Synonym: Pden_3944

Alternate gene names: 119386651

Gene position: 1081609-1082244 (Clockwise)

Preceding gene: 119386645

Following gene: 119386652

Centisome position: 62.52

GC content: 68.71

Gene sequence:

>636_bases
ATGAAAGACGCCTATTCCCTGATCCTCTCCGCCATCGACAACGGCAGCTATCGCCCCGGCGACAGGCTGGTCGAATCCGA
ACTGGCCGAACGCTTCGGCGTTTCCCGCACCCCGGTCCGCGAGGCGCTGCAGCGGCTGGAAACCCAGTCCATGCTGAAAC
GCGACGGGCGCAGCCTGATCGTCGCCACGCTGGACCACAACCAACTGGCCGAGCTTTACACGGTGCGCGCCGAACTCGAG
GCGCTGGCGGCGCGGCTGGCCGCCCGCCACGCCACGCCCGAGGAGGTGCGCGTTCTGGCCGGCATGGTCGAGGACGACCG
CGCCATCCTGGGCGACCCGCAGGCCCTGGCACGGGCGAACCGCCGCTTTCACCACCAGATCCACCTGGCCTCGCACAACC
GCTATCTGGTGCAGCAGCTGGACCTGGTGCATCGCAGCATGGCCCTGATGGCGCGCACCAGCCTGGCGGCACAGGGCCGC
GACGTCGTCACCCTGGACGAGCACCAGGCCATCGTCGATGCCATCGCCGCCCATGACGGGGCGGCGGCGGAACAGGCGCT
GCGCCATCACATCTCGATGGCCTTCGAGACCCGGCTGAAGGAAGAAGCGCGGCTGGCCGACGAGGAAGAGGATTGA

Upstream 100 bases:

>100_bases
TCGAAGATCCAGGTGGTGACATGCCGAAAATCCATGTTCCCTGCCTAAACCCGCGGCATGGCGCTTGCAATCGCCGTTCC
GAGCGCGGATCGTGCGTGCC

Downstream 100 bases:

>100_bases
TGCGCGAAATCCGCGCCCCGGCCGATCTGGAGGAGGGCGCGGCGCATCTGATGCGGGTCTGTCCGGTCTGGGCGCGCGAG
TTGCCGGCGCTGATGCCGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKDAYSLILSAIDNGSYRPGDRLVESELAERFGVSRTPVREALQRLETQSMLKRDGRSLIVATLDHNQLAELYTVRAELE
ALAARLAARHATPEEVRVLAGMVEDDRAILGDPQALARANRRFHHQIHLASHNRYLVQQLDLVHRSMALMARTSLAAQGR
DVVTLDEHQAIVDAIAAHDGAAAEQALRHHISMAFETRLKEEARLADEEED

Sequences:

>Translated_211_residues
MKDAYSLILSAIDNGSYRPGDRLVESELAERFGVSRTPVREALQRLETQSMLKRDGRSLIVATLDHNQLAELYTVRAELE
ALAARLAARHATPEEVRVLAGMVEDDRAILGDPQALARANRRFHHQIHLASHNRYLVQQLDLVHRSMALMARTSLAAQGR
DVVTLDEHQAIVDAIAAHDGAAAEQALRHHISMAFETRLKEEARLADEEED
>Mature_211_residues
MKDAYSLILSAIDNGSYRPGDRLVESELAERFGVSRTPVREALQRLETQSMLKRDGRSLIVATLDHNQLAELYTVRAELE
ALAARLAARHATPEEVRVLAGMVEDDRAILGDPQALARANRRFHHQIHLASHNRYLVQQLDLVHRSMALMARTSLAAQGR
DVVTLDEHQAIVDAIAAHDGAAAEQALRHHISMAFETRLKEEARLADEEED

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=213, Percent_Identity=30.5164319248826, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081914, Length=130, Percent_Identity=33.0769230769231, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23580; Mature: 23580

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAYSLILSAIDNGSYRPGDRLVESELAERFGVSRTPVREALQRLETQSMLKRDGRSLI
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEE
VATLDHNQLAELYTVRAELEALAARLAARHATPEEVRVLAGMVEDDRAILGDPQALARAN
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCHHHHHHHH
RRFHHQIHLASHNRYLVQQLDLVHRSMALMARTSLAAQGRDVVTLDEHQAIVDAIAAHDG
HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCC
AAAEQALRHHISMAFETRLKEEARLADEEED
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKDAYSLILSAIDNGSYRPGDRLVESELAERFGVSRTPVREALQRLETQSMLKRDGRSLI
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEE
VATLDHNQLAELYTVRAELEALAARLAARHATPEEVRVLAGMVEDDRAILGDPQALARAN
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCHHHHHHHH
RRFHHQIHLASHNRYLVQQLDLVHRSMALMARTSLAAQGRDVVTLDEHQAIVDAIAAHDG
HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCC
AAAEQALRHHISMAFETRLKEEARLADEEED
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]