| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119386042
Identifier: 119386042
GI number: 119386042
Start: 485821
End: 488112
Strand: Direct
Name: 119386042
Synonym: Pden_3325
Alternate gene names: NA
Gene position: 485821-488112 (Clockwise)
Preceding gene: 119386041
Following gene: 119386044
Centisome position: 28.08
GC content: 56.85
Gene sequence:
>2292_bases ATGCTGACTCATATCAATCTCGTCAGAAATGTGGGCCGATTTGACTCCGTATCTGCAGGCGCCAACCTTCCGTTTCAGAA ATTTACCGTGCTTTACGGCGAGAACGGGCGTGGCAAGACAACCCTTTCCGCCATTCTCAAATCCCTGGCAACGAATGACC CGCTTCTTATCGAACAGCGGCACAGGCTGGGCGCGCAGCACCCGCCTCACGTCGTTGTGGCGAGATCTGCCAACCAGCAT GTCTTTCAGAACGGTGGCTGGTCGGCATCAGATGACCGGATCGTTGTTTTCGACGATGACTTCGTTGCCCAGAATGTTTG CTCCGGGATCGAGATTGCCAGCGAACACTGCAAGAATCTTCACGAACTGATTATCGGTGCGCGGGGAGTCGCCCTGAATG AAACGCTCCAGCAGCACATCAGGGAAATCGAAGAGCACAATGCCGAGATACGCAAGCTCGGCGGTAACATTCCGGCCAGC GTGCGCGGCGCGATGAATGTCGATCAATTCTGCGCGCTCGAAAAGCGCGACGACATTGATGCCGCGATCGCCGAAACGGA ACGCAAGATCAATGCTGCCAAGGCTTCTGACGAGGTTCAGAAGCGTGAGTCGTTCAAGAACTTTGCGCTGCCCGAGTTCG ATATCGACGGACTCAACGGGCTTTTGTCCCGCGGCTTGCCGGAGCTGGAAGCGGAAGCCGCTCAAAGAGTCCGTGATCAT CTGTCCCATGCCGGTCGCAACGCAGAAACCTGGGTAGCCGAAGGGCTGCCGCGTGTCGCCGCGATGGCCGAGGCAACAGA CCGGAACGATTGCCCGTTTTGCGCCCAGAGCCTGGACGCGTCCCCTGTCATCCGCCACTATCAGGCGTATTTCAGCGACG CTTATGCCAAGCTCCGCGAGGACGTGACCGAGGCGGGTAAAGCACTCACCCGTGATTTTGGCGGTGATATCGCCGCTGCC TACGAACGAGCCATTGCGGCTATCTCTGAATCCCGTAACTTCTGGGGCCGGTTCGCCGATATCCCTGAGCAAGAATTCGA CACGGCGGCCACCGTCCGCGCCTTAAACGCGGCGCGCGAAGCCGTGCGCCAACAGCTTTTGGCAAAGCATGCGGCGCCGT TTGAAATCGCGCCCCTCAGCGAGGAAACCCTGAATGCGATCGGGGCTTATGATGCGCTTCGCCAGCAACATATCGAGGCG ATGCGCGTGTATGAGGAGGCGAACGCCAAAATCGCGCTGATAAAGGAGCAGGCAGCTTCTTCAAATCTTTCGGCCCTGCA AACCGATCTGGATAATCTAAAGCGCATCAAGGTGCGCCACAGCGATCCCTACGATGAGATCTGTCGCAAATACCTCGAAG CAGCGGCGAAAAAACAGAAAACCGAACGGGCACGGGATGCTGCGCGCGAGGCCCTTAACCAGTATCAGCAGCAGGTGTTC CCCCGATACGAAGCGGCGATCAACACTTATCTCGGCAAATTTCATGCGGGATACCGGCTAGGCAGCGTTTCCTCCCGAAA CACCCGATCCGGTGCGACATGTGATTACAAGGTTCTGATCAACAATGTTCCCGTTTCCTTATCAGCCAATGCAGGCCCCT CATTCAGGAACACATTGAGCGCCGGAGACAGGAATACACTGGCGCTCGCATTCTTCTTCGCATCGTTGGAACAGGATTCC GATCTGGCGTCGAAGATCGTTGTGATCGACGATCCGATGACGAGCCTTGATGAGCACCGTTCACTGACTACGCGGCAGGA AATCATCGCGCTGACAGGCCGGGTTACTCAGGTGATCGTCATGTCCCATGAAAAGCCGTTTCTGTGTGGGCTGTGGGAAG CGGCAAGCCGCATTAATCGCGCGGCTATAATGGTCATGCGGAATGGAGACGGCTCGACACTCGCCGAATGGAATGTCAAT GACGACTGCATCACCGAGCATGACCGGCGACACAGGCTTGTTGCCGAGTTCCTGAACAGCTACTCAGCCACGCAGGAGAG GAACGTTGCCGTGGCGCTCCGGCATATTCTCGAAGCCTTTGTCAGGGTCGCCTATCCTGAGCACTTCCCTCCCGGCTCCA TGCTTGGCCCGTTCGTCGATAAGTCCCGACAGCGGATCGGTGAACAGAACGAGATTCTCTCAAAGGCCGATACGGTTGAA CTGCGCGCGATACTGGACTACGCGAACAAGTTTCATCACGACACCAATCCGGCCTACGAGACTGAACAGATCAACGATAC CGAGCTGGAAAGTTTCGCCCGCCGGACTCTGGCTTTCACCAAGCGCACTTGA
Upstream 100 bases:
>100_bases GGGAATAGGAGGCGGCTGTGAAGAAGATCGAGAACGGAACAACCGGCGACTTTATTGATAGCCCCAACAAGGCCGCGCTG AAAGAGGTCAAGTGATCCAC
Downstream 100 bases:
>100_bases TCTGCTGCGCGCGAATTCCCGCAAGCTGCAGATGCTCATCCACCATCCAATTCGGTGGGGGACAAGCAATAGGCGGCGAA CGGAAACGAAATCCATGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MLTHINLVRNVGRFDSVSAGANLPFQKFTVLYGENGRGKTTLSAILKSLATNDPLLIEQRHRLGAQHPPHVVVARSANQH VFQNGGWSASDDRIVVFDDDFVAQNVCSGIEIASEHCKNLHELIIGARGVALNETLQQHIREIEEHNAEIRKLGGNIPAS VRGAMNVDQFCALEKRDDIDAAIAETERKINAAKASDEVQKRESFKNFALPEFDIDGLNGLLSRGLPELEAEAAQRVRDH LSHAGRNAETWVAEGLPRVAAMAEATDRNDCPFCAQSLDASPVIRHYQAYFSDAYAKLREDVTEAGKALTRDFGGDIAAA YERAIAAISESRNFWGRFADIPEQEFDTAATVRALNAAREAVRQQLLAKHAAPFEIAPLSEETLNAIGAYDALRQQHIEA MRVYEEANAKIALIKEQAASSNLSALQTDLDNLKRIKVRHSDPYDEICRKYLEAAAKKQKTERARDAAREALNQYQQQVF PRYEAAINTYLGKFHAGYRLGSVSSRNTRSGATCDYKVLINNVPVSLSANAGPSFRNTLSAGDRNTLALAFFFASLEQDS DLASKIVVIDDPMTSLDEHRSLTTRQEIIALTGRVTQVIVMSHEKPFLCGLWEAASRINRAAIMVMRNGDGSTLAEWNVN DDCITEHDRRHRLVAEFLNSYSATQERNVAVALRHILEAFVRVAYPEHFPPGSMLGPFVDKSRQRIGEQNEILSKADTVE LRAILDYANKFHHDTNPAYETEQINDTELESFARRTLAFTKRT
Sequences:
>Translated_763_residues MLTHINLVRNVGRFDSVSAGANLPFQKFTVLYGENGRGKTTLSAILKSLATNDPLLIEQRHRLGAQHPPHVVVARSANQH VFQNGGWSASDDRIVVFDDDFVAQNVCSGIEIASEHCKNLHELIIGARGVALNETLQQHIREIEEHNAEIRKLGGNIPAS VRGAMNVDQFCALEKRDDIDAAIAETERKINAAKASDEVQKRESFKNFALPEFDIDGLNGLLSRGLPELEAEAAQRVRDH LSHAGRNAETWVAEGLPRVAAMAEATDRNDCPFCAQSLDASPVIRHYQAYFSDAYAKLREDVTEAGKALTRDFGGDIAAA YERAIAAISESRNFWGRFADIPEQEFDTAATVRALNAAREAVRQQLLAKHAAPFEIAPLSEETLNAIGAYDALRQQHIEA MRVYEEANAKIALIKEQAASSNLSALQTDLDNLKRIKVRHSDPYDEICRKYLEAAAKKQKTERARDAAREALNQYQQQVF PRYEAAINTYLGKFHAGYRLGSVSSRNTRSGATCDYKVLINNVPVSLSANAGPSFRNTLSAGDRNTLALAFFFASLEQDS DLASKIVVIDDPMTSLDEHRSLTTRQEIIALTGRVTQVIVMSHEKPFLCGLWEAASRINRAAIMVMRNGDGSTLAEWNVN DDCITEHDRRHRLVAEFLNSYSATQERNVAVALRHILEAFVRVAYPEHFPPGSMLGPFVDKSRQRIGEQNEILSKADTVE LRAILDYANKFHHDTNPAYETEQINDTELESFARRTLAFTKRT >Mature_763_residues MLTHINLVRNVGRFDSVSAGANLPFQKFTVLYGENGRGKTTLSAILKSLATNDPLLIEQRHRLGAQHPPHVVVARSANQH VFQNGGWSASDDRIVVFDDDFVAQNVCSGIEIASEHCKNLHELIIGARGVALNETLQQHIREIEEHNAEIRKLGGNIPAS VRGAMNVDQFCALEKRDDIDAAIAETERKINAAKASDEVQKRESFKNFALPEFDIDGLNGLLSRGLPELEAEAAQRVRDH LSHAGRNAETWVAEGLPRVAAMAEATDRNDCPFCAQSLDASPVIRHYQAYFSDAYAKLREDVTEAGKALTRDFGGDIAAA YERAIAAISESRNFWGRFADIPEQEFDTAATVRALNAAREAVRQQLLAKHAAPFEIAPLSEETLNAIGAYDALRQQHIEA MRVYEEANAKIALIKEQAASSNLSALQTDLDNLKRIKVRHSDPYDEICRKYLEAAAKKQKTERARDAAREALNQYQQQVF PRYEAAINTYLGKFHAGYRLGSVSSRNTRSGATCDYKVLINNVPVSLSANAGPSFRNTLSAGDRNTLALAFFFASLEQDS DLASKIVVIDDPMTSLDEHRSLTTRQEIIALTGRVTQVIVMSHEKPFLCGLWEAASRINRAAIMVMRNGDGSTLAEWNVN DDCITEHDRRHRLVAEFLNSYSATQERNVAVALRHILEAFVRVAYPEHFPPGSMLGPFVDKSRQRIGEQNEILSKADTVE LRAILDYANKFHHDTNPAYETEQINDTELESFARRTLAFTKRT
Specific function: Unknown
COG id: COG4694
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84890; Mature: 84890
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTHINLVRNVGRFDSVSAGANLPFQKFTVLYGENGRGKTTLSAILKSLATNDPLLIEQR CCCHHHHHHHCCCCCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHH HRLGAQHPPHVVVARSANQHVFQNGGWSASDDRIVVFDDDFVAQNVCSGIEIASEHCKNL HHCCCCCCCCEEEECCCCCHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH HELIIGARGVALNETLQQHIREIEEHNAEIRKLGGNIPASVRGAMNVDQFCALEKRDDID HHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHCCCCHHHHHHCCCCCCHH AAIAETERKINAAKASDEVQKRESFKNFALPEFDIDGLNGLLSRGLPELEAEAAQRVRDH HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH LSHAGRNAETWVAEGLPRVAAMAEATDRNDCPFCAQSLDASPVIRHYQAYFSDAYAKLRE HHHCCCCCHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH DVTEAGKALTRDFGGDIAAAYERAIAAISESRNFWGRFADIPEQEFDTAATVRALNAARE HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AVRQQLLAKHAAPFEIAPLSEETLNAIGAYDALRQQHIEAMRVYEEANAKIALIKEQAAS HHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCC SNLSALQTDLDNLKRIKVRHSDPYDEICRKYLEAAAKKQKTERARDAAREALNQYQQQVF CCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PRYEAAINTYLGKFHAGYRLGSVSSRNTRSGATCDYKVLINNVPVSLSANAGPSFRNTLS HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCEEEECCCCCCHHHHHC AGDRNTLALAFFFASLEQDSDLASKIVVIDDPMTSLDEHRSLTTRQEIIALTGRVTQVIV CCCCCHHHHHHHHHHHCCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE MSHEKPFLCGLWEAASRINRAAIMVMRNGDGSTLAEWNVNDDCITEHDRRHRLVAEFLNS EECCCCCEEHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCHHHCCHHHHHHHHHHHHHH YSATQERNVAVALRHILEAFVRVAYPEHFPPGSMLGPFVDKSRQRIGEQNEILSKADTVE HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH LRAILDYANKFHHDTNPAYETEQINDTELESFARRTLAFTKRT HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTHINLVRNVGRFDSVSAGANLPFQKFTVLYGENGRGKTTLSAILKSLATNDPLLIEQR CCCHHHHHHHCCCCCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHH HRLGAQHPPHVVVARSANQHVFQNGGWSASDDRIVVFDDDFVAQNVCSGIEIASEHCKNL HHCCCCCCCCEEEECCCCCHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH HELIIGARGVALNETLQQHIREIEEHNAEIRKLGGNIPASVRGAMNVDQFCALEKRDDID HHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHCCCCHHHHHHCCCCCCHH AAIAETERKINAAKASDEVQKRESFKNFALPEFDIDGLNGLLSRGLPELEAEAAQRVRDH HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH LSHAGRNAETWVAEGLPRVAAMAEATDRNDCPFCAQSLDASPVIRHYQAYFSDAYAKLRE HHHCCCCCHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH DVTEAGKALTRDFGGDIAAAYERAIAAISESRNFWGRFADIPEQEFDTAATVRALNAARE HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AVRQQLLAKHAAPFEIAPLSEETLNAIGAYDALRQQHIEAMRVYEEANAKIALIKEQAAS HHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCC SNLSALQTDLDNLKRIKVRHSDPYDEICRKYLEAAAKKQKTERARDAAREALNQYQQQVF CCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PRYEAAINTYLGKFHAGYRLGSVSSRNTRSGATCDYKVLINNVPVSLSANAGPSFRNTLS HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCEEEECCCCCCHHHHHC AGDRNTLALAFFFASLEQDSDLASKIVVIDDPMTSLDEHRSLTTRQEIIALTGRVTQVIV CCCCCHHHHHHHHHHHCCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE MSHEKPFLCGLWEAASRINRAAIMVMRNGDGSTLAEWNVNDDCITEHDRRHRLVAEFLNS EECCCCCEEHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCHHHCCHHHHHHHHHHHHHH YSATQERNVAVALRHILEAFVRVAYPEHFPPGSMLGPFVDKSRQRIGEQNEILSKADTVE HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH LRAILDYANKFHHDTNPAYETEQINDTELESFARRTLAFTKRT HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA