| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119385974
Identifier: 119385974
GI number: 119385974
Start: 416027
End: 417628
Strand: Direct
Name: 119385974
Synonym: Pden_3253
Alternate gene names: NA
Gene position: 416027-417628 (Clockwise)
Preceding gene: 119385973
Following gene: 119385975
Centisome position: 24.05
GC content: 67.85
Gene sequence:
>1602_bases ATGAGCCAGACACTTGCCGTATTCCGCAACCGGACTTTCCGTGGACTCTGGCTCGGGACGGTGGCCTCGAACATGGGCGG CTTGGTGCAACAGGTCGGCGCGGCTTGGCTGATGGCGACGATGACCAGTTCGGCGACGATGATCGCGCTGGTTCAGGCCT GCGTCACCCTGCCGATTATGCTCGGCTCCTACCCCGCCGGGGTTCTGGCCGATTGCCGCGACCGGCGCAGGATCATGCAG GTGGCGCAGATCTTCATGGCGGTGGTATCGGCGGCCCTGGCGGTTCTGGCCTGGATGGGGCAGGTCACCCCGGTTGTGTT GCTGGTGTTCACGGCGCTCGTCGGCTGCGGAACCGCGCTGCAATTCCCGGCATGGCAGTCCTCCATCGGCGGGCTGGTGG TGCGGGACGAACTGCCGGCGGCGATTTCCGCCAATGCGATGGGCACCAATCTGACCCGCAGCCTCGGCCCGGCCCTTGGC GGCGCGATCGTCGCCGCTGCGGGATCGGCCATGGCCTTCGCCGTGAACGCCCTGTCCTATCTGGCGGTCATCGTCGCATT GTGGCGCTGGCGGCCTGCGCGGTCCGAAAACGATCTGCCGGCTGAGAGCCTTTTCCCTGCGATGCGCGCCGGTGTGGTGT ATTGCCTGTCTTCAGGCGACAAGTTGGGGGCGATCTGGCGTGGATTTCTGTTCTGCCTGGCGGCGATCGGGGTGCAGGCC CTGCTGCCCGCGCTGGTGCGCGACGAGATCGCGGGTGGCGCCTCTATCTATGGGATCATGCTGGGGGCCTTCGGGGCGGG TGCGGTGGGTGCGGCGCTGGTCAGCACCCGCCTCCGCGCCCGCTACGGGCTGGAGACCACCTGCCGGCTCGGCTTCGTCG CCTTCGCGCTTGCCGTCGCGGCGCTGGCCATTGCGCCGGGGCTTGGCCTTGGGATCGCCGCGCTTCTGGTCTGCGGCGCA GCCTGGCTGACGGTGCTGTCTTTGGTGAACATCTCGATTCAGGTCTCGACGCCGAAATGGGTTCTGGGCCGGATGATGGC CATCTACATGACGGCGATCTTCGGGGGCATGACGCTGGGAAGCTGGCTCTGGGGCTACGTCTCTACCCTGGGCGGCCTGC ACCTCGCCCTGCTGCTGTCGGCCGGCCTGCTGCTGCTCGGTGCGGCCTGGGGGCTTTGGGCGCCGCTGGTCGCCGCCGAG CCGGACAGCATACTGCCGGCAGAGCTCCCCGCCTCACCGCAGCCCCGCGTTGCGCTGGGCCATGACAGCGGTCCGGTGCG GATTTCGGTGGAATATGTGATCCCGGTCGAGCGGGAAGGCAGCTTCCTGACCGTAATGGAGGCGCGCCGCCGCAGCCGCG CCCGGTCAGGGGTGTCGAACTGGTCGCTGTACCACGATGTCGAAGCCCCCTCGCAATGGATCGAGACCTACGGTTTCGCC ACCTGGGGGGACTATCTGCGCCAGCGTGCGCGCAAGACGCGACAGGACGAGGCCATAATCGCGCAGTTGCATGCGCTCCA TCACGGCGATCATCCGCCGCAGGTGCGCCGGATTGTAGGGACTCGCCGTCCGCAGACCCTGCGGGCACCACCTTTGCCGT GA
Upstream 100 bases:
>100_bases AGCCTTGCCGGGCTTGACCGGGCGGATGCCGAGGCCCGGACCCGGCTGGCAGGCGCTGTGTAGGCCAGCACCATATGAAA TCCGCCAGTTCGAGATCCCG
Downstream 100 bases:
>100_bases AATAAAGTTTTTGACCTTAAACAGTCTTATTGATTTAAATGATTATATGTGCCAGAACATGGCAGGAGGACGCTGATTCC CGGTCGGCGCGACGCGAGGG
Product: protein of unknown function DUF894, DitE
Products: NA
Alternate protein names: MFS Family Transporter; Facilitator Superfamily Protein; Facilitator Transporter; MFS Transporter; Integral Membrane Efflux Protein; Facilitator Superfamily; Transport Transmembrane Protein; Facilitator Superfamily Permease; MFS Family Transporter Protein; Permease; Mfs Transporter; Transporter Facilitator Family; Arabinose Efflux Permease Family Protein; Facilitator Superfamily Transmembrane Transporter; Facilitator Superfamily Transporter; Transmembrane Efflux Protein; ABC Transporter Permease Protein; Facilitator Transpoter; Dioxygenase; MFS Family Diterpenoid Transporter; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 533; Mature: 532
Protein sequence:
>533_residues MSQTLAVFRNRTFRGLWLGTVASNMGGLVQQVGAAWLMATMTSSATMIALVQACVTLPIMLGSYPAGVLADCRDRRRIMQ VAQIFMAVVSAALAVLAWMGQVTPVVLLVFTALVGCGTALQFPAWQSSIGGLVVRDELPAAISANAMGTNLTRSLGPALG GAIVAAAGSAMAFAVNALSYLAVIVALWRWRPARSENDLPAESLFPAMRAGVVYCLSSGDKLGAIWRGFLFCLAAIGVQA LLPALVRDEIAGGASIYGIMLGAFGAGAVGAALVSTRLRARYGLETTCRLGFVAFALAVAALAIAPGLGLGIAALLVCGA AWLTVLSLVNISIQVSTPKWVLGRMMAIYMTAIFGGMTLGSWLWGYVSTLGGLHLALLLSAGLLLLGAAWGLWAPLVAAE PDSILPAELPASPQPRVALGHDSGPVRISVEYVIPVEREGSFLTVMEARRRSRARSGVSNWSLYHDVEAPSQWIETYGFA TWGDYLRQRARKTRQDEAIIAQLHALHHGDHPPQVRRIVGTRRPQTLRAPPLP
Sequences:
>Translated_533_residues MSQTLAVFRNRTFRGLWLGTVASNMGGLVQQVGAAWLMATMTSSATMIALVQACVTLPIMLGSYPAGVLADCRDRRRIMQ VAQIFMAVVSAALAVLAWMGQVTPVVLLVFTALVGCGTALQFPAWQSSIGGLVVRDELPAAISANAMGTNLTRSLGPALG GAIVAAAGSAMAFAVNALSYLAVIVALWRWRPARSENDLPAESLFPAMRAGVVYCLSSGDKLGAIWRGFLFCLAAIGVQA LLPALVRDEIAGGASIYGIMLGAFGAGAVGAALVSTRLRARYGLETTCRLGFVAFALAVAALAIAPGLGLGIAALLVCGA AWLTVLSLVNISIQVSTPKWVLGRMMAIYMTAIFGGMTLGSWLWGYVSTLGGLHLALLLSAGLLLLGAAWGLWAPLVAAE PDSILPAELPASPQPRVALGHDSGPVRISVEYVIPVEREGSFLTVMEARRRSRARSGVSNWSLYHDVEAPSQWIETYGFA TWGDYLRQRARKTRQDEAIIAQLHALHHGDHPPQVRRIVGTRRPQTLRAPPLP >Mature_532_residues SQTLAVFRNRTFRGLWLGTVASNMGGLVQQVGAAWLMATMTSSATMIALVQACVTLPIMLGSYPAGVLADCRDRRRIMQV AQIFMAVVSAALAVLAWMGQVTPVVLLVFTALVGCGTALQFPAWQSSIGGLVVRDELPAAISANAMGTNLTRSLGPALGG AIVAAAGSAMAFAVNALSYLAVIVALWRWRPARSENDLPAESLFPAMRAGVVYCLSSGDKLGAIWRGFLFCLAAIGVQAL LPALVRDEIAGGASIYGIMLGAFGAGAVGAALVSTRLRARYGLETTCRLGFVAFALAVAALAIAPGLGLGIAALLVCGAA WLTVLSLVNISIQVSTPKWVLGRMMAIYMTAIFGGMTLGSWLWGYVSTLGGLHLALLLSAGLLLLGAAWGLWAPLVAAEP DSILPAELPASPQPRVALGHDSGPVRISVEYVIPVEREGSFLTVMEARRRSRARSGVSNWSLYHDVEAPSQWIETYGFAT WGDYLRQRARKTRQDEAIIAQLHALHHGDHPPQVRRIVGTRRPQTLRAPPLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56386; Mature: 56255
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTLAVFRNRTFRGLWLGTVASNMGGLVQQVGAAWLMATMTSSATMIALVQACVTLPIM CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LGSYPAGVLADCRDRRRIMQVAQIFMAVVSAALAVLAWMGQVTPVVLLVFTALVGCGTAL HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QFPAWQSSIGGLVVRDELPAAISANAMGTNLTRSLGPALGGAIVAAAGSAMAFAVNALSY CCCCHHHCCCCEEEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LAVIVALWRWRPARSENDLPAESLFPAMRAGVVYCLSSGDKLGAIWRGFLFCLAAIGVQA HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHH LLPALVRDEIAGGASIYGIMLGAFGAGAVGAALVSTRLRARYGLETTCRLGFVAFALAVA HHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ALAIAPGLGLGIAALLVCGAAWLTVLSLVNISIQVSTPKWVLGRMMAIYMTAIFGGMTLG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHH SWLWGYVSTLGGLHLALLLSAGLLLLGAAWGLWAPLVAAEPDSILPAELPASPQPRVALG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC HDSGPVRISVEYVIPVEREGSFLTVMEARRRSRARSGVSNWSLYHDVEAPSQWIETYGFA CCCCCEEEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHCCCH TWGDYLRQRARKTRQDEAIIAQLHALHHGDHPPQVRRIVGTRRPQTLRAPPLP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SQTLAVFRNRTFRGLWLGTVASNMGGLVQQVGAAWLMATMTSSATMIALVQACVTLPIM CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LGSYPAGVLADCRDRRRIMQVAQIFMAVVSAALAVLAWMGQVTPVVLLVFTALVGCGTAL HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QFPAWQSSIGGLVVRDELPAAISANAMGTNLTRSLGPALGGAIVAAAGSAMAFAVNALSY CCCCHHHCCCCEEEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LAVIVALWRWRPARSENDLPAESLFPAMRAGVVYCLSSGDKLGAIWRGFLFCLAAIGVQA HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHH LLPALVRDEIAGGASIYGIMLGAFGAGAVGAALVSTRLRARYGLETTCRLGFVAFALAVA HHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ALAIAPGLGLGIAALLVCGAAWLTVLSLVNISIQVSTPKWVLGRMMAIYMTAIFGGMTLG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHH SWLWGYVSTLGGLHLALLLSAGLLLLGAAWGLWAPLVAAEPDSILPAELPASPQPRVALG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC HDSGPVRISVEYVIPVEREGSFLTVMEARRRSRARSGVSNWSLYHDVEAPSQWIETYGFA CCCCCEEEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHCCCH TWGDYLRQRARKTRQDEAIIAQLHALHHGDHPPQVRRIVGTRRPQTLRAPPLP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA