Click here to switch to the map view.

The map label for this gene is 119385905

Identifier: 119385905

GI number: 119385905

Start: 350279

End: 350881

Strand: Direct

Name: 119385905

Synonym: Pden_3183

Alternate gene names: NA

Gene position: 350279-350881 (Clockwise)

Preceding gene: 119385904

Following gene: 119385906

Centisome position: 20.25

GC content: 69.65

Gene sequence:

>603_bases
ATGATCCGCAGAACGCGCACCACCTATCTCGCCGCAACTGCTGCCGCCGTGATGGTGATCGGTGCTGTTTCCGTCACCGA
CATCACGCCGCGGCTGATCTGGAACGCCAGCGCCAGCCTGCCCATCGGCCTCTACCGCGTCGAACCGCCGACCACGCTCA
CCCTTGGCGATCTGGTCGCGGTCGATCCGCCCGAACCACTCGCCCAGTTCGTCACCGCGCGCGGCTATGTCGGCCCCGGC
GTGCCGCTGCTGAAGCGCGTCGCCGCCCTTCCCGGCACGCGGGTCTGCCGCACCGGCGCCACGATCACCGTCCAGGGTGA
GGCCATCGGTGAAGCGCGCGAGCGCGACAGAATCGGCCGGCCGCTGCCCACCTGGCAGGGCTGCCAGGTCGTCGGCACGG
ACGAGGTGTTTCTCATGAACCGGGAGGTCGGGGACAGCCTCGACGGCCGTTATTTCGGTCCGCTCCCGCTCGCCAGCGTC
ACCGCCCGCATCGTCCCGCTCTGGATCGATGCGGCGGGCGACGGCCGCTTCCGCCGGCCTGTGGCCGGCACGGAAGGCGG
CTCCCAGAACCTCTCTCCAACCGCAACCGAAGAGACCAAATGA

Upstream 100 bases:

>100_bases
ACGGTCAATCCATCGACGCTGGCCGAGGGAATGCCGCGCCCAACGACAATGCTGTCGATGAAGCTGCCAGTGGCAGCCCG
ACGGACCACGGGGGTGCGCC

Downstream 100 bases:

>100_bases
TGCCACAGATCGGAGAATTCACCCGCACCCAATCCGGCTACGAGGGCCGCATCCGTACCGTCACCCTCGACCTGAACCTA
GTCTTCGTGCCGACCCACAA

Product: conjugal transfer protein precursor

Products: NA

Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Peptidase; Type IV Secretory Pathway Protease TraF-Like Protein; Conjugative Transfer Signal Peptidase TraF; Plasmid Transfer Protein TraF; Type IV Secretory Pathway Protease TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MIRRTRTTYLAATAAAVMVIGAVSVTDITPRLIWNASASLPIGLYRVEPPTTLTLGDLVAVDPPEPLAQFVTARGYVGPG
VPLLKRVAALPGTRVCRTGATITVQGEAIGEARERDRIGRPLPTWQGCQVVGTDEVFLMNREVGDSLDGRYFGPLPLASV
TARIVPLWIDAAGDGRFRRPVAGTEGGSQNLSPTATEETK

Sequences:

>Translated_200_residues
MIRRTRTTYLAATAAAVMVIGAVSVTDITPRLIWNASASLPIGLYRVEPPTTLTLGDLVAVDPPEPLAQFVTARGYVGPG
VPLLKRVAALPGTRVCRTGATITVQGEAIGEARERDRIGRPLPTWQGCQVVGTDEVFLMNREVGDSLDGRYFGPLPLASV
TARIVPLWIDAAGDGRFRRPVAGTEGGSQNLSPTATEETK
>Mature_200_residues
MIRRTRTTYLAATAAAVMVIGAVSVTDITPRLIWNASASLPIGLYRVEPPTTLTLGDLVAVDPPEPLAQFVTARGYVGPG
VPLLKRVAALPGTRVCRTGATITVQGEAIGEARERDRIGRPLPTWQGCQVVGTDEVFLMNREVGDSLDGRYFGPLPLASV
TARIVPLWIDAAGDGRFRRPVAGTEGGSQNLSPTATEETK

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21249; Mature: 21249

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRTRTTYLAATAAAVMVIGAVSVTDITPRLIWNASASLPIGLYRVEPPTTLTLGDLVA
CCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEEEECCCCEEEECCEEE
VDPPEPLAQFVTARGYVGPGVPLLKRVAALPGTRVCRTGATITVQGEAIGEARERDRIGR
ECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCEEEEECCHHCCHHHHHHCCC
PLPTWQGCQVVGTDEVFLMNREVGDSLDGRYFGPLPLASVTARIVPLWIDAAGDGRFRRP
CCCCCCCCEEECCCCEEEEECCCCCCCCCCEECCCCHHHHHHEEEEEEEECCCCCCEECC
VAGTEGGSQNLSPTATEETK
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRRTRTTYLAATAAAVMVIGAVSVTDITPRLIWNASASLPIGLYRVEPPTTLTLGDLVA
CCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEEEECCCCEEEECCEEE
VDPPEPLAQFVTARGYVGPGVPLLKRVAALPGTRVCRTGATITVQGEAIGEARERDRIGR
ECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCEEEEECCHHCCHHHHHHCCC
PLPTWQGCQVVGTDEVFLMNREVGDSLDGRYFGPLPLASVTARIVPLWIDAAGDGRFRRP
CCCCCCCCEEECCCCEEEEECCCCCCCCCCEECCCCHHHHHHEEEEEEEECCCCCCEECC
VAGTEGGSQNLSPTATEETK
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA