| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119385873
Identifier: 119385873
GI number: 119385873
Start: 328642
End: 329901
Strand: Direct
Name: 119385873
Synonym: Pden_3151
Alternate gene names: NA
Gene position: 328642-329901 (Clockwise)
Preceding gene: 119385870
Following gene: 119385874
Centisome position: 19.0
GC content: 75.95
Gene sequence:
>1260_bases ATGAAGCAGTCTAGGACGGGGCGACATCCGGGCGTGAGTAACAAGCATGACGGGATTGCGGCGGCGGCGCAGGCGCTGGC GGCGGGGGATGCGCTGACCGCGCTGAAGCGGGTCGCCCTGCGCGACGATCCGCCGGCGCTGGCGCTGCGCGGCATCGCCA TGGCGCAGCTTGGCGATCTGGACCGGGCGCGGGACCTGCTGCGCCGCGCCGCGCGGGGGCTCGGTGCCGATCCCCTGGCC CGCGCCCGCTGCCGGCTGGCCGCGGCGGAAATCGCGCTGGTCACGCGCGACCTGGGCGGTCTGGAGCGGGCGCTTGGCAC GGCGCGAGGCGCGCTTGCGGCGCAAGGCGACTGGGCGAACGCCGCCCATGCCGGCTACCTGCAGGCCCGGCTGCTGCTGC TGACCGGGCGTCTCGATCAGGCCGAGGCGGTGCTTGAGACGCTGGATGCCGCCGCGCTGCCCCCGGCGTCGCGCCCCGGC TGCTGGTTGGTCGCCGCGGGCATCGCCATGCGGCGCATCCGGGCCGGCGATGCGCGGGCCGCGCTGGACCGGGCCGCCCG TGCCGCGCATCAGACGGGCATCGCCGCATTGGCGGCCGAGGTCGCACAGGCGCGCGCCGCCTTCGACGCCCCGGCCGGGC GGCTGATCGAAAGCGGGCGCGAGACCCTGCTGGACCTGGCCGGGGTCGAGGCGCTGCTCGGCGCGGACCTGCTGCTGGTC GATGCCTGCCGCAACCTTCTGCGCGGCGGCGCGACGCTGGTGCCGCTGGCCGGGCGGCCGGTGCTGATGGCGCTGCTGCG CGCGCTGGCCGAGGCATGGCCCGGCGACGCGCCGCGCGAAACCCTGCTCGCGCGTGCCTTTCGCGCCCGCCATGCCGACG AGTCGCATCGGGCAAGATTGCGGGTGGAGATCGGGCGGCTGCGCGAACACCTCTCCCCGCTGGCCGGGATAAAGGCGACG GGCCGGGGCTTCGTGCTGGAGCCTTGCGGAGGGCGCAGGATCGCCGTGCTGGCCCCGCCGGTCGAGGGTGATCATGCCGG GCTGCTGGCCCTGCTGGCCGATGGCGAGGCCTGGTCGAGTTCGGCGCTGGCCCTGGCGCTGGATGTCAGCCCGCGCAGCG TGCAGCGCGGGCTCAAGGCGCTGGAGCGGGCCGGCAGGGTGGAATGGCTGGGCCACGGCCGCGCCCGGCGTTGGGTCGCG CGAAGCGTGCCGGGTTTCCCGACAGGCTTGTTACTCCCGGCGCCCGTGCCGATGCGCTAG
Upstream 100 bases:
>100_bases CGTGAAGCAGGGCGCCGCCGCAAGGGCCAGCCAGCCGGCCGCGCCGGGCTTTTCCGTGGGCGTTGTCATTGCGGGCCTCC CGTCCGATGCTTTGCGGGAC
Downstream 100 bases:
>100_bases GATGGGCCCATGAAACGCATGGCCGAAATCATCCGCGAATATGGCCCCTTTCCGGGGATCGAGGAGGTGCATGGCGTCAG TTTCGACGGAAGGCAGGTTT
Product: tetratricopeptide TPR_4
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MKQSRTGRHPGVSNKHDGIAAAAQALAAGDALTALKRVALRDDPPALALRGIAMAQLGDLDRARDLLRRAARGLGADPLA RARCRLAAAEIALVTRDLGGLERALGTARGALAAQGDWANAAHAGYLQARLLLLTGRLDQAEAVLETLDAAALPPASRPG CWLVAAGIAMRRIRAGDARAALDRAARAAHQTGIAALAAEVAQARAAFDAPAGRLIESGRETLLDLAGVEALLGADLLLV DACRNLLRGGATLVPLAGRPVLMALLRALAEAWPGDAPRETLLARAFRARHADESHRARLRVEIGRLREHLSPLAGIKAT GRGFVLEPCGGRRIAVLAPPVEGDHAGLLALLADGEAWSSSALALALDVSPRSVQRGLKALERAGRVEWLGHGRARRWVA RSVPGFPTGLLLPAPVPMR
Sequences:
>Translated_419_residues MKQSRTGRHPGVSNKHDGIAAAAQALAAGDALTALKRVALRDDPPALALRGIAMAQLGDLDRARDLLRRAARGLGADPLA RARCRLAAAEIALVTRDLGGLERALGTARGALAAQGDWANAAHAGYLQARLLLLTGRLDQAEAVLETLDAAALPPASRPG CWLVAAGIAMRRIRAGDARAALDRAARAAHQTGIAALAAEVAQARAAFDAPAGRLIESGRETLLDLAGVEALLGADLLLV DACRNLLRGGATLVPLAGRPVLMALLRALAEAWPGDAPRETLLARAFRARHADESHRARLRVEIGRLREHLSPLAGIKAT GRGFVLEPCGGRRIAVLAPPVEGDHAGLLALLADGEAWSSSALALALDVSPRSVQRGLKALERAGRVEWLGHGRARRWVA RSVPGFPTGLLLPAPVPMR >Mature_419_residues MKQSRTGRHPGVSNKHDGIAAAAQALAAGDALTALKRVALRDDPPALALRGIAMAQLGDLDRARDLLRRAARGLGADPLA RARCRLAAAEIALVTRDLGGLERALGTARGALAAQGDWANAAHAGYLQARLLLLTGRLDQAEAVLETLDAAALPPASRPG CWLVAAGIAMRRIRAGDARAALDRAARAAHQTGIAALAAEVAQARAAFDAPAGRLIESGRETLLDLAGVEALLGADLLLV DACRNLLRGGATLVPLAGRPVLMALLRALAEAWPGDAPRETLLARAFRARHADESHRARLRVEIGRLREHLSPLAGIKAT GRGFVLEPCGGRRIAVLAPPVEGDHAGLLALLADGEAWSSSALALALDVSPRSVQRGLKALERAGRVEWLGHGRARRWVA RSVPGFPTGLLLPAPVPMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43786; Mature: 43786
Theoretical pI: Translated: 11.66; Mature: 11.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQSRTGRHPGVSNKHDGIAAAAQALAAGDALTALKRVALRDDPPALALRGIAMAQLGDL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH DRARDLLRRAARGLGADPLARARCRLAAAEIALVTRDLGGLERALGTARGALAAQGDWAN HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AAHAGYLQARLLLLTGRLDQAEAVLETLDAAALPPASRPGCWLVAAGIAMRRIRAGDARA CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHH ALDRAARAAHQTGIAALAAEVAQARAAFDAPAGRLIESGRETLLDLAGVEALLGADLLLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH DACRNLLRGGATLVPLAGRPVLMALLRALAEAWPGDAPRETLLARAFRARHADESHRARL HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH RVEIGRLREHLSPLAGIKATGRGFVLEPCGGRRIAVLAPPVEGDHAGLLALLADGEAWSS HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCC SALALALDVSPRSVQRGLKALERAGRVEWLGHGRARRWVARSVPGFPTGLLLPAPVPMR CCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKQSRTGRHPGVSNKHDGIAAAAQALAAGDALTALKRVALRDDPPALALRGIAMAQLGDL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH DRARDLLRRAARGLGADPLARARCRLAAAEIALVTRDLGGLERALGTARGALAAQGDWAN HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AAHAGYLQARLLLLTGRLDQAEAVLETLDAAALPPASRPGCWLVAAGIAMRRIRAGDARA CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHH ALDRAARAAHQTGIAALAAEVAQARAAFDAPAGRLIESGRETLLDLAGVEALLGADLLLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH DACRNLLRGGATLVPLAGRPVLMALLRALAEAWPGDAPRETLLARAFRARHADESHRARL HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH RVEIGRLREHLSPLAGIKATGRGFVLEPCGGRRIAVLAPPVEGDHAGLLALLADGEAWSS HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCC SALALALDVSPRSVQRGLKALERAGRVEWLGHGRARRWVARSVPGFPTGLLLPAPVPMR CCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA