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The map label for this gene is nodV [H]

Identifier: 119385815

GI number: 119385815

Start: 276953

End: 278287

Strand: Direct

Name: nodV [H]

Synonym: Pden_3093

Alternate gene names: 119385815

Gene position: 276953-278287 (Clockwise)

Preceding gene: 119385814

Following gene: 119385816

Centisome position: 16.01

GC content: 66.14

Gene sequence:

>1335_bases
ATGCCACGGGCAATGGACGCAAAGGACGACAGGGCGGGTGCTGCGCTGACGGATGCGGCCTGGTCCGATGTGCTGATTGC
GGTGGATCGCACCTATGCCGAGCTGATCGAACATCAGGAGCGGCTTGAGGCCCAGAACCGCGAGCTTGAGGCGCTGCGTC
AGTTCCTGTCCTCGGTCATCACCTCGGTTTCCGATGTGCTGATCGTGCTGGATCGCGACGGGCGGGTGGATGAGGTCAAT
GCCTCGACCTGTGTCTGCACCGGGCTGCCTGTCGCGGCCCTGGTCGGCCGGAGCGTGGCGGATCTGGTGCGCGAAGAGGA
TCGCGCGGGTCTTTCGGCCCTGATTGCGGAGATTGCGCGCACGCGGGCGCCGGGGCGGATGGAGCTTTCGCTTGTGAGTT
CGCGTGAGCCGGCCCCGGTCGAGGCGGTCCTGTCGCCGCGCCTCGATGATCGCGGCCGGATCGAGGGGCTGGTGCTGACG
GGGCGTCCGGTGGGGGAATTGCGCCGCGCCTATGCCCAGCTTGAACGCAGCCATGCCGAGATGAAGGCCGCTCAGGCGCA
GCTGGTCCATGGCGAGAAGCTGGCCTCATTGGGGCGTTTGCTGGCCGGGGTGGCGCATGAGCTGAACAATCCGATCAGCT
TTGTCTATGCCAATGCCCATGCGCTGGAACGCTATGCCGCCAAGTTTGAGACCTATTTCGAGCGGGTTCAGGCCGGGGCA
GACAGGGATGAACTGGTCCGCCTGCGGGAGGAATTGCGGCTGGACCGCGAGTTGCGCAACCTGCGCGAGGCGGTGCAGGG
CGCCCGCGAGGGGGCCGAAAGAGTGCGCGATATCGTCGAGGATCTGCGCCGCCTGTCCTCGGACGGGGGCGGAGAGATGG
CGGCCTTCGACCTGGTCGAGATCGCCCGCACCGCCGCCTTCTGGATCATGCGCGGGGCCGGCCACAGCACCGTGCCCGAG
ATCCATGCCGAAGGGCCGGTGATGGTTCTGGGGCATACGGGCCATATTCAGCAGGTGGTGATGAATCTGGTGCAGAACGC
GCTGGATGCGGTTTCGGAAACCGCAGCCCCGCAGATCGCCTTGCGGATCATGCGCGAGGAAGGCCGTGGCGTGCTGGACA
TCCACGACAACGGTCCGGGCATCGACGAGGCGACGGCCGCGATGATCTTTGACCCGTTCTTCACCACGAAACCCGTGGGG
AAAGGCACCGGGCTTGGCCTGTCGATCAGCCTCAAGATCGCCGAGGATCATGGCGGCAGGCTGAGTTACAGCCCCGCCTC
CGGTGGTGGCGCGCTGTTTCGGCTGGAACTGCCGCTGGCAGGAGATGGCGCATGA

Upstream 100 bases:

>100_bases
TAAGTCGTAGTCCGTCGCCCGGGTGCAGCATAGGCTTGGGATACTACCAGGCTTGACATGCAGGATGGAAAGATGCGCAA
GGAGGGGAAGAGGATTGCAG

Downstream 100 bases:

>100_bases
ACATTCTGTGGCTGCAAAGCGCCGGTTGCGGTGGCTGTACCATGTCGCTGCTATGTGCCGAGGGGCCGAATGTCTTTGAC
CTGCTTGCCGGGGCGGGGCT

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MPRAMDAKDDRAGAALTDAAWSDVLIAVDRTYAELIEHQERLEAQNRELEALRQFLSSVITSVSDVLIVLDRDGRVDEVN
ASTCVCTGLPVAALVGRSVADLVREEDRAGLSALIAEIARTRAPGRMELSLVSSREPAPVEAVLSPRLDDRGRIEGLVLT
GRPVGELRRAYAQLERSHAEMKAAQAQLVHGEKLASLGRLLAGVAHELNNPISFVYANAHALERYAAKFETYFERVQAGA
DRDELVRLREELRLDRELRNLREAVQGAREGAERVRDIVEDLRRLSSDGGGEMAAFDLVEIARTAAFWIMRGAGHSTVPE
IHAEGPVMVLGHTGHIQQVVMNLVQNALDAVSETAAPQIALRIMREEGRGVLDIHDNGPGIDEATAAMIFDPFFTTKPVG
KGTGLGLSISLKIAEDHGGRLSYSPASGGGALFRLELPLAGDGA

Sequences:

>Translated_444_residues
MPRAMDAKDDRAGAALTDAAWSDVLIAVDRTYAELIEHQERLEAQNRELEALRQFLSSVITSVSDVLIVLDRDGRVDEVN
ASTCVCTGLPVAALVGRSVADLVREEDRAGLSALIAEIARTRAPGRMELSLVSSREPAPVEAVLSPRLDDRGRIEGLVLT
GRPVGELRRAYAQLERSHAEMKAAQAQLVHGEKLASLGRLLAGVAHELNNPISFVYANAHALERYAAKFETYFERVQAGA
DRDELVRLREELRLDRELRNLREAVQGAREGAERVRDIVEDLRRLSSDGGGEMAAFDLVEIARTAAFWIMRGAGHSTVPE
IHAEGPVMVLGHTGHIQQVVMNLVQNALDAVSETAAPQIALRIMREEGRGVLDIHDNGPGIDEATAAMIFDPFFTTKPVG
KGTGLGLSISLKIAEDHGGRLSYSPASGGGALFRLELPLAGDGA
>Mature_443_residues
PRAMDAKDDRAGAALTDAAWSDVLIAVDRTYAELIEHQERLEAQNRELEALRQFLSSVITSVSDVLIVLDRDGRVDEVNA
STCVCTGLPVAALVGRSVADLVREEDRAGLSALIAEIARTRAPGRMELSLVSSREPAPVEAVLSPRLDDRGRIEGLVLTG
RPVGELRRAYAQLERSHAEMKAAQAQLVHGEKLASLGRLLAGVAHELNNPISFVYANAHALERYAAKFETYFERVQAGAD
RDELVRLREELRLDRELRNLREAVQGAREGAERVRDIVEDLRRLSSDGGGEMAAFDLVEIARTAAFWIMRGAGHSTVPEI
HAEGPVMVLGHTGHIQQVVMNLVQNALDAVSETAAPQIALRIMREEGRGVLDIHDNGPGIDEATAAMIFDPFFTTKPVGK
GTGLGLSISLKIAEDHGGRLSYSPASGGGALFRLELPLAGDGA

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=258, Percent_Identity=31.7829457364341, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788549, Length=401, Percent_Identity=26.6832917705736, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081816, Length=114, Percent_Identity=38.5964912280702, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 48015; Mature: 47884

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAMDAKDDRAGAALTDAAWSDVLIAVDRTYAELIEHQERLEAQNRELEALRQFLSSVI
CCCCCCCCCCCCCCHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
TSVSDVLIVLDRDGRVDEVNASTCVCTGLPVAALVGRSVADLVREEDRAGLSALIAEIAR
HHHHCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRAPGRMELSLVSSREPAPVEAVLSPRLDDRGRIEGLVLTGRPVGELRRAYAQLERSHAE
CCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
MKAAQAQLVHGEKLASLGRLLAGVAHELNNPISFVYANAHALERYAAKFETYFERVQAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCC
DRDELVRLREELRLDRELRNLREAVQGAREGAERVRDIVEDLRRLSSDGGGEMAAFDLVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IARTAAFWIMRGAGHSTVPEIHAEGPVMVLGHTGHIQQVVMNLVQNALDAVSETAAPQIA
HHHHHHHHHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRIMREEGRGVLDIHDNGPGIDEATAAMIFDPFFTTKPVGKGTGLGLSISLKIAEDHGGR
HHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCE
LSYSPASGGGALFRLELPLAGDGA
EECCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
PRAMDAKDDRAGAALTDAAWSDVLIAVDRTYAELIEHQERLEAQNRELEALRQFLSSVI
CCCCCCCCCCCCCHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
TSVSDVLIVLDRDGRVDEVNASTCVCTGLPVAALVGRSVADLVREEDRAGLSALIAEIAR
HHHHCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRAPGRMELSLVSSREPAPVEAVLSPRLDDRGRIEGLVLTGRPVGELRRAYAQLERSHAE
CCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
MKAAQAQLVHGEKLASLGRLLAGVAHELNNPISFVYANAHALERYAAKFETYFERVQAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCC
DRDELVRLREELRLDRELRNLREAVQGAREGAERVRDIVEDLRRLSSDGGGEMAAFDLVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IARTAAFWIMRGAGHSTVPEIHAEGPVMVLGHTGHIQQVVMNLVQNALDAVSETAAPQIA
HHHHHHHHHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRIMREEGRGVLDIHDNGPGIDEATAAMIFDPFFTTKPVGKGTGLGLSISLKIAEDHGGR
HHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCE
LSYSPASGGGALFRLELPLAGDGA
EECCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]