Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is 119385814

Identifier: 119385814

GI number: 119385814

Start: 274853

End: 276391

Strand: Direct

Name: 119385814

Synonym: Pden_3092

Alternate gene names: NA

Gene position: 274853-276391 (Clockwise)

Preceding gene: 119385809

Following gene: 119385815

Centisome position: 15.89

GC content: 65.89

Gene sequence:

>1539_bases
TTGCAGTCGTGGGCGGAAAGGATGGTCCGCACGAATCAGAACGCAGGTTCCGGTCTTTCGACAGCGCTGCTAAGGTCCGC
GAAAAGAAACGGAATCCCGATGGCATCGAAATCCACCCTCAATGCAAAGAACCTGGAGACGCTCGGCGCTGAGCGTCTGG
CGCAGCTGCTGATCGAGATCAGCACCGGCGATGCCGCAGCCAAGCGCCAGCTGCGGCTGGCTCTCGCCGGGGCGGAAGGG
CCGAGGGAAGCGGCGCGGGAGATCACCAAGCGGCTGACCAGCATCGCGAAGGCCCGGACCTTCGTGAACTGGCAGAACCG
CAAGCCGCTGGTGAAGGATCTTCAGACCCAGCGTAGCGCCATCATGGAACAGATCGCCCCGCATGATCCGGGTGAGGCGC
TGGCGCTTCTGTGGCGGTTCATGGGACTGGCCACGCCGGTGTTCGAACGCTGCGACGACAGCAGCGGCACCGTCATCGAC
ATCTTCCATCAGGCCTGCGCCGATCTGGGCGAGGTGGCGAAGGCGGCGGGTGCGGCGCCGGAGGCGCTGGCGCGGCAGGT
TCTCGACGCGCTGCAGGACAACGGCTTTGGTCAGTATGATGGTTTGATTGCCATGATTGCCCCGGCGCTGGGCCCCGAGG
GCGTCGCGCATCTGAAGACACTGGTCGAGGAACTCGGCCGCACGCCGGTGCCGGTGCCGCCAAAGAGCGAATGGCAGGCT
GTCGGCTGGGGCAGCGGCGGCACGCGCTACGCCCACGAGATGGAGGAACGCGCGCGGCAGAGTACGGTCGAGATGGCGCT
GAAGGACATCGCCGACGTGCAGGGCGACGTCGATGGCTTCATCGCCCAGTACGACCCGAAGACCCGCAAGGTGCCAAAGA
TCGCGGCCGAGATCGCGCAGCGCTTGCTGGCGGCGGGCAGGGCAGGGGACGCGCTTGGTTTCATCGAGCGGGCTGAGGTG
GACAAGGCGCGCTGGATCCCGCCCGAGTGGCAGGACGCCCGACTTGCCGTGCTGGAGGCGCTCGACCGGAAAGACGAGGC
GCAGGCATTCCGCTGGGCGTGTTTCGAGCGCGACCTGTCGGGCGAGCATCTGCGGGCCTATCTGAAGCGTCTGCCGGATT
TCGACGACATCGAGGCCGAGGAACGCGCGATGGCGCATGCTGCTGGCCATCCCGACCTGCTGGCTGCACTGGCCTTCTTT
CTGAATTGGCCATCGCTTGGCCACGCCGCGCGAATGCTGATCGACCGGCAGGACGAGGTCGACGGCGATCACTACGAATT
CCTCGCCCCGGCGGCAGAGACATTGGCCGAGAAGCATCCGCTCGCCGCGACGGTGGCGCTTCGGGCGATGATCGATTTCA
CGCTGATCCAAGGGAGGCAGAAGCGTTATGGCTATGCCGCCCAGCATTTGGCAACCTGTGCCGACCTGGCCGGACGGATC
GAGGACTTCGGACTGGTCGAGCCGCACCCTGCCTATGCCGCGCGCCTGAAGACCGAGCATGGCAAGAAGACCGGCTTCTG
GTCGCGGATGGACGGATGA

Upstream 100 bases:

>100_bases
TCTTTGGCTTCCACAGTGCGCAATGCGGAAGGCTAGTCAACGAACACATTGATATTGCGTGTAAAAAGGAAAATCCACGT
AATGCCACGCAGGGGCTGAA

Downstream 100 bases:

>100_bases
TGGACGTGCTACCGGAAAATCATTCCGCCACCCAATGGAAGCATGGTGGAAGCACGAGGGGAAAAACCGCTGCGCAATCC
TGACAATCCGCGCGCAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MQSWAERMVRTNQNAGSGLSTALLRSAKRNGIPMASKSTLNAKNLETLGAERLAQLLIEISTGDAAAKRQLRLALAGAEG
PREAAREITKRLTSIAKARTFVNWQNRKPLVKDLQTQRSAIMEQIAPHDPGEALALLWRFMGLATPVFERCDDSSGTVID
IFHQACADLGEVAKAAGAAPEALARQVLDALQDNGFGQYDGLIAMIAPALGPEGVAHLKTLVEELGRTPVPVPPKSEWQA
VGWGSGGTRYAHEMEERARQSTVEMALKDIADVQGDVDGFIAQYDPKTRKVPKIAAEIAQRLLAAGRAGDALGFIERAEV
DKARWIPPEWQDARLAVLEALDRKDEAQAFRWACFERDLSGEHLRAYLKRLPDFDDIEAEERAMAHAAGHPDLLAALAFF
LNWPSLGHAARMLIDRQDEVDGDHYEFLAPAAETLAEKHPLAATVALRAMIDFTLIQGRQKRYGYAAQHLATCADLAGRI
EDFGLVEPHPAYAARLKTEHGKKTGFWSRMDG

Sequences:

>Translated_512_residues
MQSWAERMVRTNQNAGSGLSTALLRSAKRNGIPMASKSTLNAKNLETLGAERLAQLLIEISTGDAAAKRQLRLALAGAEG
PREAAREITKRLTSIAKARTFVNWQNRKPLVKDLQTQRSAIMEQIAPHDPGEALALLWRFMGLATPVFERCDDSSGTVID
IFHQACADLGEVAKAAGAAPEALARQVLDALQDNGFGQYDGLIAMIAPALGPEGVAHLKTLVEELGRTPVPVPPKSEWQA
VGWGSGGTRYAHEMEERARQSTVEMALKDIADVQGDVDGFIAQYDPKTRKVPKIAAEIAQRLLAAGRAGDALGFIERAEV
DKARWIPPEWQDARLAVLEALDRKDEAQAFRWACFERDLSGEHLRAYLKRLPDFDDIEAEERAMAHAAGHPDLLAALAFF
LNWPSLGHAARMLIDRQDEVDGDHYEFLAPAAETLAEKHPLAATVALRAMIDFTLIQGRQKRYGYAAQHLATCADLAGRI
EDFGLVEPHPAYAARLKTEHGKKTGFWSRMDG
>Mature_512_residues
MQSWAERMVRTNQNAGSGLSTALLRSAKRNGIPMASKSTLNAKNLETLGAERLAQLLIEISTGDAAAKRQLRLALAGAEG
PREAAREITKRLTSIAKARTFVNWQNRKPLVKDLQTQRSAIMEQIAPHDPGEALALLWRFMGLATPVFERCDDSSGTVID
IFHQACADLGEVAKAAGAAPEALARQVLDALQDNGFGQYDGLIAMIAPALGPEGVAHLKTLVEELGRTPVPVPPKSEWQA
VGWGSGGTRYAHEMEERARQSTVEMALKDIADVQGDVDGFIAQYDPKTRKVPKIAAEIAQRLLAAGRAGDALGFIERAEV
DKARWIPPEWQDARLAVLEALDRKDEAQAFRWACFERDLSGEHLRAYLKRLPDFDDIEAEERAMAHAAGHPDLLAALAFF
LNWPSLGHAARMLIDRQDEVDGDHYEFLAPAAETLAEKHPLAATVALRAMIDFTLIQGRQKRYGYAAQHLATCADLAGRI
EDFGLVEPHPAYAARLKTEHGKKTGFWSRMDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56111; Mature: 56111

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSWAERMVRTNQNAGSGLSTALLRSAKRNGIPMASKSTLNAKNLETLGAERLAQLLIEI
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
STGDAAAKRQLRLALAGAEGPREAAREITKRLTSIAKARTFVNWQNRKPLVKDLQTQRSA
CCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IMEQIAPHDPGEALALLWRFMGLATPVFERCDDSSGTVIDIFHQACADLGEVAKAAGAAP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
EALARQVLDALQDNGFGQYDGLIAMIAPALGPEGVAHLKTLVEELGRTPVPVPPKSEWQA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
VGWGSGGTRYAHEMEERARQSTVEMALKDIADVQGDVDGFIAQYDPKTRKVPKIAAEIAQ
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
RLLAAGRAGDALGFIERAEVDKARWIPPEWQDARLAVLEALDRKDEAQAFRWACFERDLS
HHHHCCCCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
GEHLRAYLKRLPDFDDIEAEERAMAHAAGHPDLLAALAFFLNWPSLGHAARMLIDRQDEV
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
DGDHYEFLAPAAETLAEKHPLAATVALRAMIDFTLIQGRQKRYGYAAQHLATCADLAGRI
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
EDFGLVEPHPAYAARLKTEHGKKTGFWSRMDG
HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQSWAERMVRTNQNAGSGLSTALLRSAKRNGIPMASKSTLNAKNLETLGAERLAQLLIEI
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
STGDAAAKRQLRLALAGAEGPREAAREITKRLTSIAKARTFVNWQNRKPLVKDLQTQRSA
CCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IMEQIAPHDPGEALALLWRFMGLATPVFERCDDSSGTVIDIFHQACADLGEVAKAAGAAP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
EALARQVLDALQDNGFGQYDGLIAMIAPALGPEGVAHLKTLVEELGRTPVPVPPKSEWQA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
VGWGSGGTRYAHEMEERARQSTVEMALKDIADVQGDVDGFIAQYDPKTRKVPKIAAEIAQ
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
RLLAAGRAGDALGFIERAEVDKARWIPPEWQDARLAVLEALDRKDEAQAFRWACFERDLS
HHHHCCCCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
GEHLRAYLKRLPDFDDIEAEERAMAHAAGHPDLLAALAFFLNWPSLGHAARMLIDRQDEV
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
DGDHYEFLAPAAETLAEKHPLAATVALRAMIDFTLIQGRQKRYGYAAQHLATCADLAGRI
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
EDFGLVEPHPAYAARLKTEHGKKTGFWSRMDG
HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA