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The map label for this gene is tnpA1 [H]

Identifier: 119385801

GI number: 119385801

Start: 261211

End: 261627

Strand: Direct

Name: tnpA1 [H]

Synonym: Pden_3079

Alternate gene names: 119385801

Gene position: 261211-261627 (Clockwise)

Preceding gene: 119385800

Following gene: 119385805

Centisome position: 15.1

GC content: 60.43

Gene sequence:

>417_bases
ATGCACTATGACACCGGCAAGCACTGCGTTTTCTATCATCGCTATCACATCGTCTGGTCGACGAAGTATCGCTACAAGGT
GCGGATCGGGCCGCTGCGGCTCAGGGTGCGCGACATCTGCCGCCAGGTGTGCCGCGAGAACGGGGTCGACATCTTGCGCG
GGGTGCTGTCGAGCGACCACGTCCACATGTTCGTGTCGGTGCCGCCCAGGCTCGCCATCTCGGATCTGGTGCGCAAGATG
AAGGGCCGTTCGTCTTATCGGGTGCAGCGGGAATTTCCGCAGATCCGCAAGCGCTACTGGGGCTGCCGGTTCTGGGGTAG
GGGCTATTTTTCAACCACCAACGGCGCCATCACCGAAGACATCGTACTTCAGTACCTCGAAAATCACATCGCTGATCCTA
CCGGCGCCAGCCGGTAG

Upstream 100 bases:

>100_bases
TCCAGTCGGACCTGCTTCAGCGCGAAGAATCGGCTTATGATCCTATCCTCCCGAAATGAGCCGCAGCCGGGGCAAGGGCT
CATTTCGGGAGGATAGGATC

Downstream 100 bases:

>100_bases
TCGTTCAGTGCTTCTGGTACCTCGCCTTGGTCCGCCTCCCAATCAGCAAGGTCCTGCCATCTGGAAGCTTCCAAGAGTTT
CGCCCGTTCACGCTGCTTCC

Product: transposase IS200-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MHYDTGKHCVFYHRYHIVWSTKYRYKVRIGPLRLRVRDICRQVCRENGVDILRGVLSSDHVHMFVSVPPRLAISDLVRKM
KGRSSYRVQREFPQIRKRYWGCRFWGRGYFSTTNGAITEDIVLQYLENHIADPTGASR

Sequences:

>Translated_138_residues
MHYDTGKHCVFYHRYHIVWSTKYRYKVRIGPLRLRVRDICRQVCRENGVDILRGVLSSDHVHMFVSVPPRLAISDLVRKM
KGRSSYRVQREFPQIRKRYWGCRFWGRGYFSTTNGAITEDIVLQYLENHIADPTGASR
>Mature_138_residues
MHYDTGKHCVFYHRYHIVWSTKYRYKVRIGPLRLRVRDICRQVCRENGVDILRGVLSSDHVHMFVSVPPRLAISDLVRKM
KGRSSYRVQREFPQIRKRYWGCRFWGRGYFSTTNGAITEDIVLQYLENHIADPTGASR

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 16404; Mature: 16404

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYDTGKHCVFYHRYHIVWSTKYRYKVRIGPLRLRVRDICRQVCRENGVDILRGVLSSDH
CCCCCCCEEEEEEEEEEEEECCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
VHMFVSVPPRLAISDLVRKMKGRSSYRVQREFPQIRKRYWGCRFWGRGYFSTTNGAITED
EEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH
IVLQYLENHIADPTGASR
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHYDTGKHCVFYHRYHIVWSTKYRYKVRIGPLRLRVRDICRQVCRENGVDILRGVLSSDH
CCCCCCCEEEEEEEEEEEEECCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
VHMFVSVPPRLAISDLVRKMKGRSSYRVQREFPQIRKRYWGCRFWGRGYFSTTNGAITED
EEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH
IVLQYLENHIADPTGASR
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]