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The map label for this gene is yiaD [H]

Identifier: 119385600

GI number: 119385600

Start: 41880

End: 42527

Strand: Direct

Name: yiaD [H]

Synonym: Pden_2875

Alternate gene names: 119385600

Gene position: 41880-42527 (Clockwise)

Preceding gene: 119385599

Following gene: 119385606

Centisome position: 2.42

GC content: 69.29

Gene sequence:

>648_bases
ATGAAGACCCGTATTTCGCTGCTTCTCGCCTCTGCCGGCTTGATCGCCATCAGCGCCTGCACGCCGGCCGATCCCTACGG
CCAGCCCCAGCAGACCAGCCGCACCCAGCAGGGCGCCATCGCCGGCGCGGTCGTCGGCGGCCTGATCGGCGCAGGCGAAA
GCCGCTCGAATGCCGTCAAGGGCGCGATCATCGGCGCGACGGCGGGCGCCGTCGGCGGCTCGATCCTCGACCAGCAGCAG
CGTTCGTTGCAGCAGTCGCTGAACAACCCCAACATCCAGATCGTGAACCACGGCACCCATCTGTCGGTCGTCATGCCGGA
ATCCACGCTGTTCGCCACCGATTCGGCCGCCGTGGGCGCTCAGGGGCAAAACGACCTCTACACCATCGCGCGCAACCTCA
CCCAGTATCCCAACAGCCGCATCCAGATCGTCGGCCATACCGACAGCACCGGCTCGGCCGCCTATAACCAGGACCTGTCC
GAACGCCGCGCGCGCTCGGTCGCCGGCATCCTGACCGCCGGCGGCGTGGCGCAATCGCGCGTCACCACCCTGGGCCGCGG
CGCCACCCAGCCGGTCGCCTCGAACGACACGGCCGCGGGCCGCGCCCAGAACCGCCGCGTGGAAATCCTGATTACCCCGA
CCCGCTGA

Upstream 100 bases:

>100_bases
GACCGCGTTTGGGCATCAGCCGCCGGCCCCGGAAGCAAGCAGGCCGGCCGCGTCGCAAGGACAGGCGGCGTAGGATCGCC
CTGAAAAGAAAGGTAAAAGA

Downstream 100 bases:

>100_bases
TCGCGGCAGGACATGCAGGACGCGGGGGCCGGCAGCCGAAAGGTTGCCGGCCCTTTCCGTTTCCGCCTTGGTCGGACGAA
TAAGGAAAACCCCCGAAGCG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKTRISLLLASAGLIAISACTPADPYGQPQQTSRTQQGAIAGAVVGGLIGAGESRSNAVKGAIIGATAGAVGGSILDQQQ
RSLQQSLNNPNIQIVNHGTHLSVVMPESTLFATDSAAVGAQGQNDLYTIARNLTQYPNSRIQIVGHTDSTGSAAYNQDLS
ERRARSVAGILTAGGVAQSRVTTLGRGATQPVASNDTAAGRAQNRRVEILITPTR

Sequences:

>Translated_215_residues
MKTRISLLLASAGLIAISACTPADPYGQPQQTSRTQQGAIAGAVVGGLIGAGESRSNAVKGAIIGATAGAVGGSILDQQQ
RSLQQSLNNPNIQIVNHGTHLSVVMPESTLFATDSAAVGAQGQNDLYTIARNLTQYPNSRIQIVGHTDSTGSAAYNQDLS
ERRARSVAGILTAGGVAQSRVTTLGRGATQPVASNDTAAGRAQNRRVEILITPTR
>Mature_215_residues
MKTRISLLLASAGLIAISACTPADPYGQPQQTSRTQQGAIAGAVVGGLIGAGESRSNAVKGAIIGATAGAVGGSILDQQQ
RSLQQSLNNPNIQIVNHGTHLSVVMPESTLFATDSAAVGAQGQNDLYTIARNLTQYPNSRIQIVGHTDSTGSAAYNQDLS
ERRARSVAGILTAGGVAQSRVTTLGRGATQPVASNDTAAGRAQNRRVEILITPTR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=37.4429223744292, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788957, Length=113, Percent_Identity=38.0530973451327, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22069; Mature: 22069

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRISLLLASAGLIAISACTPADPYGQPQQTSRTQQGAIAGAVVGGLIGAGESRSNAVK
CCHHHEEHHHCCCEEEEEECCCCCCCCCCHHHCHHHHCCHHHHHHHHHHCCCCCCCCCCC
GAIIGATAGAVGGSILDQQQRSLQQSLNNPNIQIVNHGTHLSVVMPESTLFATDSAAVGA
EEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCEEEECCCCCCCC
QGQNDLYTIARNLTQYPNSRIQIVGHTDSTGSAAYNQDLSERRARSVAGILTAGGVAQSR
CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VTTLGRGATQPVASNDTAAGRAQNRRVEILITPTR
HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKTRISLLLASAGLIAISACTPADPYGQPQQTSRTQQGAIAGAVVGGLIGAGESRSNAVK
CCHHHEEHHHCCCEEEEEECCCCCCCCCCHHHCHHHHCCHHHHHHHHHHCCCCCCCCCCC
GAIIGATAGAVGGSILDQQQRSLQQSLNNPNIQIVNHGTHLSVVMPESTLFATDSAAVGA
EEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCEEEECCCCCCCC
QGQNDLYTIARNLTQYPNSRIQIVGHTDSTGSAAYNQDLSERRARSVAGILTAGGVAQSR
CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VTTLGRGATQPVASNDTAAGRAQNRRVEILITPTR
HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]