| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is rbpE [H]
Identifier: 119358437
GI number: 119358437
Start: 3066383
End: 3066655
Strand: Direct
Name: rbpE [H]
Synonym: Cpha266_2673
Alternate gene names: 119358437
Gene position: 3066383-3066655 (Clockwise)
Preceding gene: 119358433
Following gene: 119358442
Centisome position: 97.85
GC content: 44.69
Gene sequence:
>273_bases ATGAATATTTACATTGGTAATTTGCCTTATCAAGTCACTGAAGATGATCTTCGCGATGCATTCTCGCAGTTCGGACAGGT TGACAGCGCAAACATCATCACCGACAAGTTTTCAGGCCGTTCCAAAGGGTTCGGGTTTGTTGACATGCCTCATGATGACG AAGCCCGTGAAGCTATCGAATCAATGAATGACAAGGATTTGAAAGGTCGTACTATAAAAGTCAATGAAGCAAGGCCGCGC GAAGAAAGGCCGGCAAGAAGAGATCGCTATTAA
Upstream 100 bases:
>100_bases ATTTAGCCAGTGGTTGGCTGATCGCGATTCAAATAATTTGTGCTTTGGTTATTTGCTTGCGTCTCTATTCTATCAATGCA CATGTTTACTGAGACTAACA
Downstream 100 bases:
>100_bases TTGGCGCCTCCCCCCGTTTAAAAAAAAAGCCCGGCTGTTTGACGATTGAACAGCCGGGCTTTTTCACTTCTCTTTTTTTT TGGACTCCCCGTTACTTCTT
Product: RNP-1 like RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 90
Protein sequence:
>90_residues MNIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIESMNDKDLKGRTIKVNEARPR EERPARRDRY
Sequences:
>Translated_90_residues MNIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIESMNDKDLKGRTIKVNEARPR EERPARRDRY >Mature_90_residues MNIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIESMNDKDLKGRTIKVNEARPR EERPARRDRY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=43.2098765432099, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI4757926, Length=80, Percent_Identity=38.75, Blast_Score=72, Evalue=1e-13, Organism=Homo sapiens, GI35493811, Length=80, Percent_Identity=38.75, Blast_Score=72, Evalue=1e-13, Organism=Homo sapiens, GI185135971, Length=82, Percent_Identity=43.9024390243902, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=38.75, Blast_Score=70, Evalue=5e-13, Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=38.75, Blast_Score=70, Evalue=5e-13, Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=38.75, Blast_Score=70, Evalue=5e-13, Organism=Homo sapiens, GI291084655, Length=84, Percent_Identity=40.4761904761905, Blast_Score=69, Evalue=6e-13, Organism=Homo sapiens, GI4504715, Length=88, Percent_Identity=39.7727272727273, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI208431836, Length=88, Percent_Identity=39.7727272727273, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI208431833, Length=88, Percent_Identity=39.7727272727273, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=34.2105263157895, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=7e-12, Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=8e-12, Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI49355761, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI49355765, Length=78, Percent_Identity=35.8974358974359, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI118600973, Length=73, Percent_Identity=39.7260273972603, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI4502847, Length=84, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI188219593, Length=83, Percent_Identity=33.7349397590361, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI188219591, Length=83, Percent_Identity=33.7349397590361, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI221316765, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI283945537, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI283945529, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI115511032, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI221316769, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI221316767, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI221316771, Length=78, Percent_Identity=35.8974358974359, Blast_Score=63, Evalue=4e-11, Organism=Homo sapiens, GI221316773, Length=78, Percent_Identity=35.8974358974359, Blast_Score=63, Evalue=4e-11, Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=5e-11, Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=33.7349397590361, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=41.25, Blast_Score=76, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=37.6623376623377, Blast_Score=75, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17532863, Length=82, Percent_Identity=35.3658536585366, Blast_Score=69, Evalue=6e-13, Organism=Caenorhabditis elegans, GI32564506, Length=89, Percent_Identity=39.3258426966292, Blast_Score=68, Evalue=7e-13, Organism=Caenorhabditis elegans, GI32564504, Length=88, Percent_Identity=39.7727272727273, Blast_Score=68, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17531965, Length=89, Percent_Identity=39.3258426966292, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17531963, Length=89, Percent_Identity=39.3258426966292, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17539498, Length=92, Percent_Identity=40.2173913043478, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=36.8421052631579, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567131, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17567133, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17537143, Length=77, Percent_Identity=38.961038961039, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25141353, Length=81, Percent_Identity=40.7407407407407, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17510027, Length=81, Percent_Identity=40.7407407407407, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71993203, Length=86, Percent_Identity=38.3720930232558, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71993209, Length=86, Percent_Identity=38.3720930232558, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71993217, Length=86, Percent_Identity=38.3720930232558, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17510025, Length=81, Percent_Identity=40.7407407407407, Blast_Score=62, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324312, Length=80, Percent_Identity=36.25, Blast_Score=64, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6321013, Length=82, Percent_Identity=42.6829268292683, Blast_Score=60, Evalue=4e-11, Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=39.5061728395062, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=39.5061728395062, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=39.5061728395062, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=39.5061728395062, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=39.5061728395062, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=39.5061728395062, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=39.5061728395062, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=36.8421052631579, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI24583879, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24583875, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI281364913, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24583877, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24583873, Length=83, Percent_Identity=37.3493975903614, Blast_Score=62, Evalue=5e-11, Organism=Drosophila melanogaster, GI24654797, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI45552715, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24654810, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24654800, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24654793, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24654807, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI17136378, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24654804, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 10413; Mature: 10413
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIE CEEEECCCCCEECHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEECCCCCHHHHHHH SMNDKDLKGRTIKVNEARPREERPARRDRY CCCCCCCCCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MNIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIE CEEEECCCCCEECHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEECCCCCHHHHHHH SMNDKDLKGRTIKVNEARPREERPARRDRY CCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]