Definition Chlorobium phaeobacteroides DSM 266 chromosome, complete genome.
Accession NC_008639
Length 3,133,902

Click here to switch to the map view.

The map label for this gene is 119358360

Identifier: 119358360

GI number: 119358360

Start: 2968727

End: 2970553

Strand: Reverse

Name: 119358360

Synonym: Cpha266_2592

Alternate gene names: NA

Gene position: 2970553-2968727 (Counterclockwise)

Preceding gene: 119358361

Following gene: 119358359

Centisome position: 94.79

GC content: 49.04

Gene sequence:

>1827_bases
ATGGCTTATTTTAATCACGTTTGTCTTGTTGAGGCTCCTCAGGCGATTATTACGCCTTTTCCCCGGTTTATTACTGATTG
TATCGGTATCTGTTATCTTGCCGCGGCGGTTGAGGATGTTGTTGATAGTATCGTGATTCCTGAGAATTATTATAACGACG
GCTTGTTTGAAAGTTTTCGTTTGTTGCTGAAGAGGCAACCGGTGGATCTTGTGGGGATCTCTTCAATGACCGGTTGTTTT
AATAATGCGACGAGACTTGCCGAGATTGCCAGGGAGCATGGTGCTTTTGTGGTTATGGGGGGGTTTCATCCTACGGCTCT
TCCTGAAGAGGTGTTGAAACTTTCATGCGTCGATGCGGTGGTGATCGGGGAGGGTGAGGCTACGTTCAGGGAGCTGGTGC
TGAAGGGGCCTTCCCGGGAGGTTAAAGGGCTTGCTTTCAGGGATAACGGGGGGGTTGTGTATACCGGCGTGCGGGAGATT
ATCGGCGATATTGATTCGATAGCGTTTCCTTTGCGCAGTCTGCGTCCTCTCCGGTATGGGGAGAGCGGGTCGAATTATTC
TATTGATACGATTTATACTTCTCGAGGTTGTCCCTGGTCGTGTTCGTTTTGCGCTAATGATCAGATGCATAAGAACTGGC
GGGGTAGAAGCGCGGAGAATGTTGTTGATGAAATCGCTCTGTTGCATGATCCGAAAAAGAAGAAGCTGCTCAAGATCTGG
GATGCGAATTTTCTGACGAATATCAAGCGGGCGGAGGCTATCTGCGATTTGATGATCGATCGGGGGTTGACCAATTTCAG
GATCATGACGGAGACAAGGGCAAAGGATCTGATCAGGGCGGAACGGATTCTGGATAAGCTTCATCGAGTGGGGTTGAGCA
AGGTGGGGCTCGGTATCGAGAGTCCTAATCCTGAAATTCTTGCGATGATGAACAAGAAGAATGTGCTTGACGATGTTTCG
ACGGCTATTGATCTTTTGCGGAAGCATCGCGTTGGCGCCGAGGGGTATTTTATTATCGGTCATTATACGGAGTCTGTCGA
GGATACCGTTGTGTATCCTGAGTTTGCCAAGGGGCTTGGCCTGAAGCAGGCTTTGTTTATGGCGATGACTCCCTATCCTG
GTACGAAAATATTCGAGGAGTATAAGAGAGAGGAGAAGATTACTTCGTATGACTGGGATCTGTATAATAATTTCTGTCCG
GTTGTGGAAACCAGGAGTATGGATAATGCCACGTTGATGAAGATGATGGTTTATTGTAATGTGGCGTTCTGCAATTACTG
GTCGGTCATGAAGAGAAATAGTGCCGGCGCTGTTCTTATTGTTATGATGAAGGATCTTTTTCAGCTTTGTCTGCTTTTGC
GGGTTAACAAGAATGTTGGGGAGGAGCAGGTTAGCAGCGCTATTTTTGAGGCTTTTGAGCGGTATCTTGCTACGAAACCT
GTTCTGGAGTATCGGGGCAAGGCTTCTTTGAAGCCATTGGCGCGCCCTCTTGTGGTGACGGTTGAGCACTCTCCGGGTCG
TTCGATTGCGTTTGTTATCAGCCAGGATGGCGATAAACGGGTGCTTTCGCTGGTGGATAGGAGGGGGGGCGCTGTTGCCG
AGGGTCCGGTGATCAGGCTCGATGAGCTTATTGCCTGCGCGAACTGTATTTCCATGGATAGCTTGATGCGTCTGCTTTCG
ATGAACGAGTTATTGAGAAATAATCCCGGAAGGAAAAACGAGCTGCTGTTTTCGGTGCTTCAGGACAGGGACGCCTGGCG
TCTTTCAAGAAGGTTGCTTATGCTTTATTCCGGTTCGTTTACAAGGCGTGCCGGAGCGCGGGCATAG

Upstream 100 bases:

>100_bases
GATTGGCGGGTTCGTTGTTTTTCCTGTGATTCTGCTGCGTTGTGGTTTGTGTTGTTGTTGTCTTTTTCCGATAATCGGCT
AACGGTTAGTGTTCCTTCTT

Downstream 100 bases:

>100_bases
GGTTTTTACTGCCGGAAGGCGGAATTCAAAGGAATGGCGATGATCGAGGCTGTGTTATGGGATAATGATGGTTTGCTTGT
CGATAGTGAGGCGATGTTTT

Product: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 608; Mature: 607

Protein sequence:

>608_residues
MAYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFRLLLKRQPVDLVGISSMTGCF
NNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAVVIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREI
IGDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW
DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKNVLDDVS
TAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCP
VVETRSMDNATLMKMMVYCNVAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP
VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRLDELIACANCISMDSLMRLLS
MNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSFTRRAGARA

Sequences:

>Translated_608_residues
MAYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFRLLLKRQPVDLVGISSMTGCF
NNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAVVIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREI
IGDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW
DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKNVLDDVS
TAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCP
VVETRSMDNATLMKMMVYCNVAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP
VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRLDELIACANCISMDSLMRLLS
MNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSFTRRAGARA
>Mature_607_residues
AYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFRLLLKRQPVDLVGISSMTGCFN
NATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAVVIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREII
GDIDSIAFPLRSLRPLRYGESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIWD
ANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIESPNPEILAMMNKKNVLDDVST
AIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLGLKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCPV
VETRSMDNATLMKMMVYCNVAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKPV
LEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRLDELIACANCISMDSLMRLLSM
NELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSFTRRAGARA

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 68332; Mature: 68201

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFR
CCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHH
LLLKRQPVDLVGISSMTGCFNNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAV
HHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCEE
VIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREIIGDIDSIAFPLRSLRPLRYG
EECCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECHHHHHCCHHHHHHHHHHCCCCCCC
ESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW
CCCCCEEEEEEEECCCCCEECCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIE
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
SPNPEILAMMNKKNVLDDVSTAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLG
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECHHHHHCCC
LKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCPVVETRSMDNATLMKMMVYCN
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEECCCCCHHHHHHHHHHHH
VAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRL
HHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHH
DELIACANCISMDSLMRLLSMNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
TRRAGARA
CCCCCCCC
>Mature Secondary Structure 
AYFNHVCLVEAPQAIITPFPRFITDCIGICYLAAAVEDVVDSIVIPENYYNDGLFESFR
CCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHH
LLLKRQPVDLVGISSMTGCFNNATRLAEIAREHGAFVVMGGFHPTALPEEVLKLSCVDAV
HHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCEE
VIGEGEATFRELVLKGPSREVKGLAFRDNGGVVYTGVREIIGDIDSIAFPLRSLRPLRYG
EECCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECHHHHHCCHHHHHHHHHHCCCCCCC
ESGSNYSIDTIYTSRGCPWSCSFCANDQMHKNWRGRSAENVVDEIALLHDPKKKKLLKIW
CCCCCEEEEEEEECCCCCEECCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
DANFLTNIKRAEAICDLMIDRGLTNFRIMTETRAKDLIRAERILDKLHRVGLSKVGLGIE
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
SPNPEILAMMNKKNVLDDVSTAIDLLRKHRVGAEGYFIIGHYTESVEDTVVYPEFAKGLG
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECHHHHHCCC
LKQALFMAMTPYPGTKIFEEYKREEKITSYDWDLYNNFCPVVETRSMDNATLMKMMVYCN
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEECCCCCHHHHHHHHHHHH
VAFCNYWSVMKRNSAGAVLIVMMKDLFQLCLLLRVNKNVGEEQVSSAIFEAFERYLATKP
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
VLEYRGKASLKPLARPLVVTVEHSPGRSIAFVISQDGDKRVLSLVDRRGGAVAEGPVIRL
HHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHH
DELIACANCISMDSLMRLLSMNELLRNNPGRKNELLFSVLQDRDAWRLSRRLLMLYSGSF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
TRRAGARA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]