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The map label for this gene is ybbD [H]

Identifier: 119358346

GI number: 119358346

Start: 2953213

End: 2954340

Strand: Direct

Name: ybbD [H]

Synonym: Cpha266_2578

Alternate gene names: 119358346

Gene position: 2953213-2954340 (Clockwise)

Preceding gene: 119358345

Following gene: 119358347

Centisome position: 94.23

GC content: 54.43

Gene sequence:

>1128_bases
ATGAAAAGAAACCGATTCCCGCTCTCACTGCTGATCATGCTCTTGATGCTTCAGACCCCGGCTGCCTGGGCGGCAAAAGA
GCCTGACAGTCTGGGAATCAAAATCGGCCAGATGATTATGACCGGATTCAGAGGTTGCTCTCTTGCGGAATCGCCGCAAA
TTGCATCGGATATCCGGCGGCAACGAATAGGCGGGGTCGTACTCTTCGACTACGACGTTCCATCCCGCTCGCCCATCCGT
AACATCACAACGCCCTCCCGGCTCATGAAACTGACCAGAGAGCTTCAGGGAATAACGGAAATTCCGCTCCTTATCGCCAT
CGACCAGGAGGGAGGGCGGGTAAACCGCCTCAAACCCGCTCTCGGCTTTCCCCCGTCGCTCTCGGCCGCCCGGCTCGGAA
AACTCGACAATACCGACAGCACAACCGCAGAGGCAGCCAAAACAGCGGAAACGCTGAAAACCATGCACCTGTCGATGAAC
CTCGCCCCGGTCGTCGATCTCAACAGCAACAAAGAGAACCCTGTCATCGGCAAACTTCAGAGAAGTTTTTCCGACGACCC
GGACGTCGTCACAAGAAACGCCCGGGCCACCTGCAACGCATTCCGCGAAAAAGGAATCATTGCGACCCTCAAACACTTTC
CCGGCCACGGCAGCTCAACCACCGATACCCACAAAGGATTTACCGACATTACCGGCACCTGGCGCGAAAACGAGCTCCAG
CCATACCGTCAGCTCATAGCCGGAGGGTACAACGACGCCATCATGACCGCACACGTCTACAACGCAACGATCGACAGCCT
CTACCCCGCAACGCTCTCAAAAAAAACACTCAAAGGAATCCTTCGTGAAAAACTCGGCTTCAGAGGGGTAATCATCACCG
ACGACATGCAGATGAAAGCGATTGCCGACCATTACGGACTCGAAGAGGCTCTCCGTCTTGCCATCGAAGCCGATGCCGAC
ATCCTGCTGTTCGGCAACAACACAACCTTTGACCCCGACATCGCCAGAAAAGCCATTGCCATCATCAGAACGATGGTCAG
TAAAAAAATCATCACCACGGACCGAATCGACCGCTCCTATCGAAGAATCATGACGCTCAAAGAACGATACCTCTTTCAAT
GCAAATGA

Upstream 100 bases:

>100_bases
AGAGGTTCAGGAAGACGACACCGTAGCCATCGATGTTGTGGATGGCGAACTGAAACTCACAAAAAAAATCGTCTAAAAAA
AACAGCAAAAACACTCTCAT

Downstream 100 bases:

>100_bases
AAACGCTCTACCTTGTCAGACACGCCAAATCGAGCTGGGATAACGCCCGGATGACCGATTTCGAACGCCCGCTCAACGAA
ATCGGCATACAATCCGCCCC

Product: glycoside hydrolase family 3 protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MKRNRFPLSLLIMLLMLQTPAAWAAKEPDSLGIKIGQMIMTGFRGCSLAESPQIASDIRRQRIGGVVLFDYDVPSRSPIR
NITTPSRLMKLTRELQGITEIPLLIAIDQEGGRVNRLKPALGFPPSLSAARLGKLDNTDSTTAEAAKTAETLKTMHLSMN
LAPVVDLNSNKENPVIGKLQRSFSDDPDVVTRNARATCNAFREKGIIATLKHFPGHGSSTTDTHKGFTDITGTWRENELQ
PYRQLIAGGYNDAIMTAHVYNATIDSLYPATLSKKTLKGILREKLGFRGVIITDDMQMKAIADHYGLEEALRLAIEADAD
ILLFGNNTTFDPDIARKAIAIIRTMVSKKIITTDRIDRSYRRIMTLKERYLFQCK

Sequences:

>Translated_375_residues
MKRNRFPLSLLIMLLMLQTPAAWAAKEPDSLGIKIGQMIMTGFRGCSLAESPQIASDIRRQRIGGVVLFDYDVPSRSPIR
NITTPSRLMKLTRELQGITEIPLLIAIDQEGGRVNRLKPALGFPPSLSAARLGKLDNTDSTTAEAAKTAETLKTMHLSMN
LAPVVDLNSNKENPVIGKLQRSFSDDPDVVTRNARATCNAFREKGIIATLKHFPGHGSSTTDTHKGFTDITGTWRENELQ
PYRQLIAGGYNDAIMTAHVYNATIDSLYPATLSKKTLKGILREKLGFRGVIITDDMQMKAIADHYGLEEALRLAIEADAD
ILLFGNNTTFDPDIARKAIAIIRTMVSKKIITTDRIDRSYRRIMTLKERYLFQCK
>Mature_375_residues
MKRNRFPLSLLIMLLMLQTPAAWAAKEPDSLGIKIGQMIMTGFRGCSLAESPQIASDIRRQRIGGVVLFDYDVPSRSPIR
NITTPSRLMKLTRELQGITEIPLLIAIDQEGGRVNRLKPALGFPPSLSAARLGKLDNTDSTTAEAAKTAETLKTMHLSMN
LAPVVDLNSNKENPVIGKLQRSFSDDPDVVTRNARATCNAFREKGIIATLKHFPGHGSSTTDTHKGFTDITGTWRENELQ
PYRQLIAGGYNDAIMTAHVYNATIDSLYPATLSKKTLKGILREKLGFRGVIITDDMQMKAIADHYGLEEALRLAIEADAD
ILLFGNNTTFDPDIARKAIAIIRTMVSKKIITTDRIDRSYRRIMTLKERYLFQCK

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=305, Percent_Identity=30.1639344262295, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 41704; Mature: 41704

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNRFPLSLLIMLLMLQTPAAWAAKEPDSLGIKIGQMIMTGFRGCSLAESPQIASDIRR
CCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
QRIGGVVLFDYDVPSRSPIRNITTPSRLMKLTRELQGITEIPLLIAIDQEGGRVNRLKPA
HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC
LGFPPSLSAARLGKLDNTDSTTAEAAKTAETLKTMHLSMNLAPVVDLNSNKENPVIGKLQ
CCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
RSFSDDPDVVTRNARATCNAFREKGIIATLKHFPGHGSSTTDTHKGFTDITGTWRENELQ
HHCCCCCCCEECCCHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
PYRQLIAGGYNDAIMTAHVYNATIDSLYPATLSKKTLKGILREKLGFRGVIITDDMQMKA
HHHHHHHCCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
IADHYGLEEALRLAIEADADILLFGNNTTFDPDIARKAIAIIRTMVSKKIITTDRIDRSY
HHHHCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRIMTLKERYLFQCK
HHHHHHHHHHHEECC
>Mature Secondary Structure
MKRNRFPLSLLIMLLMLQTPAAWAAKEPDSLGIKIGQMIMTGFRGCSLAESPQIASDIRR
CCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
QRIGGVVLFDYDVPSRSPIRNITTPSRLMKLTRELQGITEIPLLIAIDQEGGRVNRLKPA
HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC
LGFPPSLSAARLGKLDNTDSTTAEAAKTAETLKTMHLSMNLAPVVDLNSNKENPVIGKLQ
CCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
RSFSDDPDVVTRNARATCNAFREKGIIATLKHFPGHGSSTTDTHKGFTDITGTWRENELQ
HHCCCCCCCEECCCHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
PYRQLIAGGYNDAIMTAHVYNATIDSLYPATLSKKTLKGILREKLGFRGVIITDDMQMKA
HHHHHHHCCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
IADHYGLEEALRLAIEADADILLFGNNTTFDPDIARKAIAIIRTMVSKKIITTDRIDRSY
HHHHCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRIMTLKERYLFQCK
HHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]