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The map label for this gene is recO

Identifier: 119358324

GI number: 119358324

Start: 2931802

End: 2932587

Strand: Direct

Name: recO

Synonym: Cpha266_2556

Alternate gene names: 119358324

Gene position: 2931802-2932587 (Clockwise)

Preceding gene: 119358322

Following gene: 119358325

Centisome position: 93.55

GC content: 51.4

Gene sequence:

>786_bases
GTGATCGTCAAAACCCGTGCAATCGTGCTCAGGGAGATCCGTTACCGCGATCAATCCAAAATCTGTTCGCTCTTCACCAG
AGAGTTCGGATTGCTTTCCGTCATCATCAAGGGCGGAAGAAATCCCAAAAGCAAACTTGCCGGACGATTCATAGCAGGCA
CTGTTCTCGATATCGTTCTCTACAAAAAAACAACCCGGGAAATACAGCTCGTCAGTGAAGGAAACCTGCTTTTCAGCCCC
ATGGTTCCCCAACCGGATATCGAACGCTACGCAATAATGTACCGCATCATCGACCTTGTCAGCCAGTCCATTGACGGGCA
GGAAAAAAACATCCCCCTCTTCTCCCTCATCGCCAGCGTTCTCGAAGAGCTCTACAGCACCAGCGACCGTTTCAGACTCC
TCTACTCCTGGTTTCTGCTCAAGCTGGTCTCACTTCTCGGATTCGAACCATCCATTCACCGCTGCGTCCTGAGCCATGAA
GAGATCTCCCCTGCAACGCTTGCAGAAAACAAAGGCGAACTCTGCTTTCTGTTCAACCCGGGAGGCGTAGCACTCCCGGC
AAGCAAGAGCGTTATCGAAAACGAAAACCGCCCGCTCTCAATGGCTACCTACGCTCTCCTCAGCGCCATATCGTCCACGC
CGCTCAATTTGCTCAAAAACATCGAAGCCATACCTCCGCAGACAGACCTGCTCTGCAACCTGCTCGAAGAATATTGCACC
CTGCATCTGGTACACCACCCGCACAAAAAAAACATTGCCATTGTTTCCCAAATCCTGTCCGAATAA

Upstream 100 bases:

>100_bases
ATTATTGTTCTTCGTAATACGAAAAAAAAACGATTGGAGCCTCCACCTGAAGGCCTGACGTATATAACTATATTTCCAAA
AATAAAAAAGTACACCTGAA

Downstream 100 bases:

>100_bases
ACGGCATCTCCTGTCATATATCGTGAACGGTTCGAAGGCAACGCAGACGAAACCCCGAAAAGAGGCGATCGTCGCCTCAA
TCGAAACGCGGAACAAATAA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MIVKTRAIVLREIRYRDQSKICSLFTREFGLLSVIIKGGRNPKSKLAGRFIAGTVLDIVLYKKTTREIQLVSEGNLLFSP
MVPQPDIERYAIMYRIIDLVSQSIDGQEKNIPLFSLIASVLEELYSTSDRFRLLYSWFLLKLVSLLGFEPSIHRCVLSHE
EISPATLAENKGELCFLFNPGGVALPASKSVIENENRPLSMATYALLSAISSTPLNLLKNIEAIPPQTDLLCNLLEEYCT
LHLVHHPHKKNIAIVSQILSE

Sequences:

>Translated_261_residues
MIVKTRAIVLREIRYRDQSKICSLFTREFGLLSVIIKGGRNPKSKLAGRFIAGTVLDIVLYKKTTREIQLVSEGNLLFSP
MVPQPDIERYAIMYRIIDLVSQSIDGQEKNIPLFSLIASVLEELYSTSDRFRLLYSWFLLKLVSLLGFEPSIHRCVLSHE
EISPATLAENKGELCFLFNPGGVALPASKSVIENENRPLSMATYALLSAISSTPLNLLKNIEAIPPQTDLLCNLLEEYCT
LHLVHHPHKKNIAIVSQILSE
>Mature_261_residues
MIVKTRAIVLREIRYRDQSKICSLFTREFGLLSVIIKGGRNPKSKLAGRFIAGTVLDIVLYKKTTREIQLVSEGNLLFSP
MVPQPDIERYAIMYRIIDLVSQSIDGQEKNIPLFSLIASVLEELYSTSDRFRLLYSWFLLKLVSLLGFEPSIHRCVLSHE
EISPATLAENKGELCFLFNPGGVALPASKSVIENENRPLSMATYALLSAISSTPLNLLKNIEAIPPQTDLLCNLLEEYCT
LHLVHHPHKKNIAIVSQILSE

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_CHLPD (A1BJG7)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_912968.1
- ProteinModelPortal:   A1BJG7
- STRING:   A1BJG7
- GeneID:   4569012
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_2556
- NMPDR:   fig|290317.7.peg.2673
- eggNOG:   COG1381
- HOGENOM:   HBG405049
- OMA:   RDQSKIC
- ProtClustDB:   CLSK638084
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29351; Mature: 29351

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKTRAIVLREIRYRDQSKICSLFTREFGLLSVIIKGGRNPKSKLAGRFIAGTVLDIVL
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YKKTTREIQLVSEGNLLFSPMVPQPDIERYAIMYRIIDLVSQSIDGQEKNIPLFSLIASV
HHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LEELYSTSDRFRLLYSWFLLKLVSLLGFEPSIHRCVLSHEEISPATLAENKGELCFLFNP
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCCCEEEEECC
GGVALPASKSVIENENRPLSMATYALLSAISSTPLNLLKNIEAIPPQTDLLCNLLEEYCT
CCEECCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
LHLVHHPHKKNIAIVSQILSE
HHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIVKTRAIVLREIRYRDQSKICSLFTREFGLLSVIIKGGRNPKSKLAGRFIAGTVLDIVL
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YKKTTREIQLVSEGNLLFSPMVPQPDIERYAIMYRIIDLVSQSIDGQEKNIPLFSLIASV
HHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LEELYSTSDRFRLLYSWFLLKLVSLLGFEPSIHRCVLSHEEISPATLAENKGELCFLFNP
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCCCEEEEECC
GGVALPASKSVIENENRPLSMATYALLSAISSTPLNLLKNIEAIPPQTDLLCNLLEEYCT
CCEECCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
LHLVHHPHKKNIAIVSQILSE
HHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA