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The map label for this gene is xseB

Identifier: 119358214

GI number: 119358214

Start: 2820393

End: 2820662

Strand: Direct

Name: xseB

Synonym: Cpha266_2446

Alternate gene names: 119358214

Gene position: 2820393-2820662 (Clockwise)

Preceding gene: 119358198

Following gene: 119358225

Centisome position: 90.0

GC content: 44.44

Gene sequence:

>270_bases
ATGGCTGTAACCTCTGCTAAAAAAAATCCCGGATCTCCCGGTATCGAAGAACTGATTTCTCGACTTGAAGAGATCACCAG
AAATATTGAAAACCCTGAAACAGGAATCGAAAACTCCATCGCCCTTTACGAAGAAGGGCTTGCCATTGCTGAACAATGTA
AAAAAAGGCTGCAGGAAGCCCGCAAAAAAATCGAAATCATTAATCCCGAGCTGGCAAAAAACTGGCCGGACACTGCCCGA
AACAGAGATCTCTTTGACTCGGAAATCTGA

Upstream 100 bases:

>100_bases
AATGGTCGCACTATCGACAAACTTCACTCGCTCACCTGCCTTTTTGAATACTCTCTCTGTTTGCGTAAGTTAACACCATT
CATCAAATACTTATCGACAC

Downstream 100 bases:

>100_bases
AAAAAGCTATCCTGCAAGCTTTTTCTGTAAAAGATCGTTCACTATTGCAGGATTGCCCTTCCCTTTCATCCTGGCCATGC
ACTGACCAACAAAAAAGCCG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MAVTSAKKNPGSPGIEELISRLEEITRNIENPETGIENSIALYEEGLAIAEQCKKRLQEARKKIEIINPELAKNWPDTAR
NRDLFDSEI

Sequences:

>Translated_89_residues
MAVTSAKKNPGSPGIEELISRLEEITRNIENPETGIENSIALYEEGLAIAEQCKKRLQEARKKIEIINPELAKNWPDTAR
NRDLFDSEI
>Mature_88_residues
AVTSAKKNPGSPGIEELISRLEEITRNIENPETGIENSIALYEEGLAIAEQCKKRLQEARKKIEIINPELAKNWPDTARN
RDLFDSEI

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_CHLPD (A1BJ57)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_912858.1
- ProteinModelPortal:   A1BJ57
- SMR:   A1BJ57
- STRING:   A1BJ57
- GeneID:   4568874
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_2446
- NMPDR:   fig|290317.7.peg.2560
- eggNOG:   NOG80178
- HOGENOM:   HBG728416
- OMA:   NIENPET
- ProtClustDB:   CLSK2320831
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 10049; Mature: 9918

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTSAKKNPGSPGIEELISRLEEITRNIENPETGIENSIALYEEGLAIAEQCKKRLQEA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RKKIEIINPELAKNWPDTARNRDLFDSEI
HHHHHHCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVTSAKKNPGSPGIEELISRLEEITRNIENPETGIENSIALYEEGLAIAEQCKKRLQEA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RKKIEIINPELAKNWPDTARNRDLFDSEI
HHHHHHCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA