| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is purN [H]
Identifier: 119357771
GI number: 119357771
Start: 2292608
End: 2293210
Strand: Direct
Name: purN [H]
Synonym: Cpha266_1978
Alternate gene names: 119357771
Gene position: 2292608-2293210 (Clockwise)
Preceding gene: 119357769
Following gene: 119357772
Centisome position: 73.16
GC content: 49.42
Gene sequence:
>603_bases ATGACTAACAGGAAAACCCGTCTTGCTGTATTCTGTTCCGGAGGAGGCAGCAATTTCCAGGCACTGTATCACGCCATAAA AAGAAAAAAGCTTTCAGCGGAAATCGTTCTCTGCCTGTCAAACCGCTCCCGATGCGGAGCAATGGAGTTTGCCCGCGAGC ATAAGATCAAGGATGTTCATCTTTCGGAGAAACAGTTCCCCTCTTTCGACGCTTTTACAGAAGCGATGCTTGAAACACTC CGGAGCAATGAGATTGATCTCATTCTCCTTGCTGGCTACATGCGCAAAGTTCCCGACGCTGTAGTAGGAGCTTTTCCGGA AAGAATCCTCAACATCCACCCTGCCCTCTTGCCAAAATTCGGAGGAGAGGGCATGTACGGGCTGAATGTTCATGCTGCTG TTATCGCTTCAGGCGAAACCATCAGCGGAGCAACCGTTCATCTGGTCAATGAAGAGTATGACAAGGGAAGAGTACTCATG CAGCAAACTGTTCCGGTAATGCCTGACGATAGTGCTGAAAAACTGGCTGAGCGTGTTCTTGCATGTGAGCACCAGCTCTA TGCCGAAGCTCTTGAAAAGCTGCTGGGAGAACAGGAAGCATGA
Upstream 100 bases:
>100_bases AAAGCGCTTTCTATACCATCATCGAACAACCTGATTTGCAGGAAAGAAAAAAAATGAATAGAAGCATAGCAACCAATCGT TTCGCCGAAATAACAAGGAG
Downstream 100 bases:
>100_bases TCCTGAAAGAGTTGAGCATCAGTGAAATTTTTCACTCGATCCAGGGCGAATCATCCTTTGCCGGATGGCCCTGTGCGTTC GTCAGACTTGCCGGTTGCGG
Product: phosphoribosylglycinamide formyltransferase
Products: NA
Alternate protein names: 5'-phosphoribosylglycinamide transformylase; GAR transformylase; GART [H]
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MTNRKTRLAVFCSGGGSNFQALYHAIKRKKLSAEIVLCLSNRSRCGAMEFAREHKIKDVHLSEKQFPSFDAFTEAMLETL RSNEIDLILLAGYMRKVPDAVVGAFPERILNIHPALLPKFGGEGMYGLNVHAAVIASGETISGATVHLVNEEYDKGRVLM QQTVPVMPDDSAEKLAERVLACEHQLYAEALEKLLGEQEA
Sequences:
>Translated_200_residues MTNRKTRLAVFCSGGGSNFQALYHAIKRKKLSAEIVLCLSNRSRCGAMEFAREHKIKDVHLSEKQFPSFDAFTEAMLETL RSNEIDLILLAGYMRKVPDAVVGAFPERILNIHPALLPKFGGEGMYGLNVHAAVIASGETISGATVHLVNEEYDKGRVLM QQTVPVMPDDSAEKLAERVLACEHQLYAEALEKLLGEQEA >Mature_199_residues TNRKTRLAVFCSGGGSNFQALYHAIKRKKLSAEIVLCLSNRSRCGAMEFAREHKIKDVHLSEKQFPSFDAFTEAMLETLR SNEIDLILLAGYMRKVPDAVVGAFPERILNIHPALLPKFGGEGMYGLNVHAAVIASGETISGATVHLVNEEYDKGRVLMQ QTVPVMPDDSAEKLAERVLACEHQLYAEALEKLLGEQEA
Specific function: De novo purine biosynthesis; third step. [C]
COG id: COG0299
COG function: function code F; Folate-dependent phosphoribosylglycinamide formyltransferase PurN
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GART family [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=189, Percent_Identity=34.9206349206349, Blast_Score=123, Evalue=8e-29, Organism=Homo sapiens, GI209869995, Length=189, Percent_Identity=34.9206349206349, Blast_Score=123, Evalue=8e-29, Organism=Homo sapiens, GI209869993, Length=189, Percent_Identity=34.9206349206349, Blast_Score=123, Evalue=8e-29, Organism=Escherichia coli, GI1788846, Length=180, Percent_Identity=34.4444444444444, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787483, Length=125, Percent_Identity=32.8, Blast_Score=67, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17567511, Length=193, Percent_Identity=30.5699481865285, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI24582400, Length=197, Percent_Identity=35.5329949238579, Blast_Score=133, Evalue=9e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR004607 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =2.1.2.2 [H]
Molecular weight: Translated: 22102; Mature: 21971
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00373 GART
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNRKTRLAVFCSGGGSNFQALYHAIKRKKLSAEIVLCLSNRSRCGAMEFAREHKIKDVH CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCCCCC LSEKQFPSFDAFTEAMLETLRSNEIDLILLAGYMRKVPDAVVGAFPERILNIHPALLPKF CCHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHCCHHHHCCC GGEGMYGLNVHAAVIASGETISGATVHLVNEEYDKGRVLMQQTVPVMPDDSAEKLAERVL CCCCEECCEEEEEEEECCCCCCCCEEEEECCCCCCCCEEHHHCCCCCCCCHHHHHHHHHH ACEHQLYAEALEKLLGEQEA HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TNRKTRLAVFCSGGGSNFQALYHAIKRKKLSAEIVLCLSNRSRCGAMEFAREHKIKDVH CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCCCCC LSEKQFPSFDAFTEAMLETLRSNEIDLILLAGYMRKVPDAVVGAFPERILNIHPALLPKF CCHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHCCHHHHCCC GGEGMYGLNVHAAVIASGETISGATVHLVNEEYDKGRVLMQQTVPVMPDDSAEKLAERVL CCCCEECCEEEEEEEECCCCCCCCEEEEECCCCCCCCEEHHHCCCCCCCCHHHHHHHHHH ACEHQLYAEALEKLLGEQEA HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA