Click here to switch to the map view.

The map label for this gene is ygcF [C]

Identifier: 119357772

GI number: 119357772

Start: 2293207

End: 2293878

Strand: Direct

Name: ygcF [C]

Synonym: Cpha266_1979

Alternate gene names: 119357772

Gene position: 2293207-2293878 (Clockwise)

Preceding gene: 119357771

Following gene: 119357774

Centisome position: 73.17

GC content: 49.26

Gene sequence:

>672_bases
ATGATCCTGAAAGAGTTGAGCATCAGTGAAATTTTTCACTCGATCCAGGGCGAATCATCCTTTGCCGGATGGCCCTGTGC
GTTCGTCAGACTTGCCGGTTGCGGTAACGGGTGCAATTTTTGTGACACCACTTATGCCGAAACCGACGGATTTATGCTTG
AAATCCCCGATATCATTATGCAGACCCAGGCATTCAGAGCTCCAATCATTGAAATAACCGGCGGAGAACCATTGCTTCAA
CCCGCTGTCTATCCGCTCATGCAGCAGCTCTGCAATCTTGGCGAAACCGTTTTGCTTGAAACCGGCGGCTTTCTCTCCGT
TGACAAGGTTGACTCGCGCGTTCACAAAATCATTGATCTCAAACCGCCATCGTCAGGGGTTTGCGAGAGAAACTGCCCTG
AAAACATCACTCTCGCGTTGCATGCCGGCAAAAAGCTCTCCCAAACGTTTGAGTTCAAGATTGTCGTTGCGAGTCGTGAA
GACTACGACTGGGCAAAAGCTCTCCTGTTGCAGCATCAGCTTTATTGCTCATGCATCGTCATGATGGGGGTAATTCATGA
AAAACTTGAACCGTCAACCCTTGCGGAATGGATTCTTCGCGACAGGCTTCCGGTCAGGATGCAACTCCAGCTTCACAAAT
ATATCTGGCCTTTGGCAACAAGAGGAACGTAA

Upstream 100 bases:

>100_bases
TGCCTGACGATAGTGCTGAAAAACTGGCTGAGCGTGTTCTTGCATGTGAGCACCAGCTCTATGCCGAAGCTCTTGAAAAG
CTGCTGGGAGAACAGGAAGC

Downstream 100 bases:

>100_bases
GGAGACCATTACACTTCCGACTGAAAGTTCACCGTATCTCTGATGGTATAATCGTTTCCGCTTCCGGACGATGAGGTCGA
AAGCATCTCTCCAAGAAGTC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Radical Activating; Radical SAM Family Protein; Organic Radical Activating; Organic Radical Activating Protein; Radical SAM-Superfamily Protein; Radical Sam Domain Protein; 7-Cyano-7-Deazaguanosine Biosynthesis Protein QueE; Radical Activating ; NrdG Protein; MoaA Family Fe-S Oxidoreductase; 50S Ribosomal Protein L; 6- Pyruvoyltetrahydropterin 2-Reductase; Queuosine Biosynthesis Protein QueE; Radical Activating Family Protein; Organic Radical Activating Protein; Radical SAM Superfamily Protein; Queuosine Biosynthesis Protein; Radical SAM Protein; Radical-Activating Radical SAM Superfamily; Organic Radical Activating Protein NrdG; Radical SAM; Radical SAM Family Fe-S Protein

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MILKELSISEIFHSIQGESSFAGWPCAFVRLAGCGNGCNFCDTTYAETDGFMLEIPDIIMQTQAFRAPIIEITGGEPLLQ
PAVYPLMQQLCNLGETVLLETGGFLSVDKVDSRVHKIIDLKPPSSGVCERNCPENITLALHAGKKLSQTFEFKIVVASRE
DYDWAKALLLQHQLYCSCIVMMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYIWPLATRGT

Sequences:

>Translated_223_residues
MILKELSISEIFHSIQGESSFAGWPCAFVRLAGCGNGCNFCDTTYAETDGFMLEIPDIIMQTQAFRAPIIEITGGEPLLQ
PAVYPLMQQLCNLGETVLLETGGFLSVDKVDSRVHKIIDLKPPSSGVCERNCPENITLALHAGKKLSQTFEFKIVVASRE
DYDWAKALLLQHQLYCSCIVMMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYIWPLATRGT
>Mature_223_residues
MILKELSISEIFHSIQGESSFAGWPCAFVRLAGCGNGCNFCDTTYAETDGFMLEIPDIIMQTQAFRAPIIEITGGEPLLQ
PAVYPLMQQLCNLGETVLLETGGFLSVDKVDSRVHKIIDLKPPSSGVCERNCPENITLALHAGKKLSQTFEFKIVVASRE
DYDWAKALLLQHQLYCSCIVMMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYIWPLATRGT

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24985; Mature: 24985

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKELSISEIFHSIQGESSFAGWPCAFVRLAGCGNGCNFCDTTYAETDGFMLEIPDIIM
CCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCEEEECHHHHH
QTQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETGGFLSVDKVDSRVHKIIDL
HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEHHHHHHHHHHHEEC
KPPSSGVCERNCPENITLALHAGKKLSQTFEFKIVVASREDYDWAKALLLQHQLYCSCIV
CCCCCCCCCCCCCCCEEEEEECCCHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
MMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYIWPLATRGT
HHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MILKELSISEIFHSIQGESSFAGWPCAFVRLAGCGNGCNFCDTTYAETDGFMLEIPDIIM
CCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCEEEECHHHHH
QTQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETGGFLSVDKVDSRVHKIIDL
HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEHHHHHHHHHHHEEC
KPPSSGVCERNCPENITLALHAGKKLSQTFEFKIVVASREDYDWAKALLLQHQLYCSCIV
CCCCCCCCCCCCCCCEEEEEECCCHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
MMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYIWPLATRGT
HHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA