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The map label for this gene is ccsA [H]

Identifier: 119357605

GI number: 119357605

Start: 2062900

End: 2063697

Strand: Direct

Name: ccsA [H]

Synonym: Cpha266_1808

Alternate gene names: 119357605

Gene position: 2062900-2063697 (Clockwise)

Preceding gene: 119357604

Following gene: 119357606

Centisome position: 65.83

GC content: 48.12

Gene sequence:

>798_bases
ATGGGCATCAATTTCAACACTGCAGCCTTTCTTGCCATTGCGTTATGGGCAGGAGGATCGATACTCCATCCCCTTGCACA
AAACAAACCGGCACTTAAACGACTGGCCTATATCCTGATGCTTTCAGGATCGGCCGTCATGGCAGGATTTATCGTCATCT
ACTGGATATCCCTCGACCGTCCTCCGCTCAGAACACTTGGAGAAACCCGCATGTGGTATGCGACAATGATACCTCTGGTC
GGTTTTCTGGTCGAATATCGATGGAAAATAGGCTGGCTTAAATACTACTGCATGGGGTTGGCGGGATTTTTTCTTGGAAT
AAACCTGCTCCACCCTGAAGTGTTTGACAAAACGCTTATGCCTGCACTGCAAAGCGTCTGGTTCATTCCTCATGTTATCG
TTTATCTTGTCGGCTACGTCCTGCTTGCCGCCTCTTCGGCATCTGCATGGCATAATGTTTTTCTCATATCCCGCTCAAAG
GAGAATAAAAATTATCAGCACCTGTCCCACTACCTTGCGCTGCTTGGATTTGTTCTGTTGACATTCGGTCTTGTATTTGG
CGCACTCTGGGCTAAAGAAGCCTGGGGCCATTACTGGACCTGGGATCCCAAAGAAACATGGGCATTCATTGCCTGGCTGA
TCTATCTGGGCTATCTGCACCTTTTCAGCTATAAAATCTCCACAAAAAAACTACAGTGGTATCTCGCCCTTGCCTTTTTA
GTGCTGCTCATCAGCTGGTTCGGCGTCAACTATCTGCCCTCTGCCGCCAATAGTGTTCATAGTTACCAGCAGAGCTGA

Upstream 100 bases:

>100_bases
GTGATCCATGGTTACCGGCGGTCTATATCGGATTCTTTATGATCATGGCTGGAAATCTCCTGTTTTTCTGGAATGGCATC
AAACGATCCGGAGGCGCATA

Downstream 100 bases:

>100_bases
AAAAAGTGTCGATCTGCACAAGCTCCCGCAACAAAAATGCCGTCTGCTCCTGCTCTTGCGTTTCAGCGTTGTCGGGCTTG
ACGCAGATCGGCATCTCACC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MGINFNTAAFLAIALWAGGSILHPLAQNKPALKRLAYILMLSGSAVMAGFIVIYWISLDRPPLRTLGETRMWYATMIPLV
GFLVEYRWKIGWLKYYCMGLAGFFLGINLLHPEVFDKTLMPALQSVWFIPHVIVYLVGYVLLAASSASAWHNVFLISRSK
ENKNYQHLSHYLALLGFVLLTFGLVFGALWAKEAWGHYWTWDPKETWAFIAWLIYLGYLHLFSYKISTKKLQWYLALAFL
VLLISWFGVNYLPSAANSVHSYQQS

Sequences:

>Translated_265_residues
MGINFNTAAFLAIALWAGGSILHPLAQNKPALKRLAYILMLSGSAVMAGFIVIYWISLDRPPLRTLGETRMWYATMIPLV
GFLVEYRWKIGWLKYYCMGLAGFFLGINLLHPEVFDKTLMPALQSVWFIPHVIVYLVGYVLLAASSASAWHNVFLISRSK
ENKNYQHLSHYLALLGFVLLTFGLVFGALWAKEAWGHYWTWDPKETWAFIAWLIYLGYLHLFSYKISTKKLQWYLALAFL
VLLISWFGVNYLPSAANSVHSYQQS
>Mature_264_residues
GINFNTAAFLAIALWAGGSILHPLAQNKPALKRLAYILMLSGSAVMAGFIVIYWISLDRPPLRTLGETRMWYATMIPLVG
FLVEYRWKIGWLKYYCMGLAGFFLGINLLHPEVFDKTLMPALQSVWFIPHVIVYLVGYVLLAASSASAWHNVFLISRSKE
NKNYQHLSHYLALLGFVLLTFGLVFGALWAKEAWGHYWTWDPKETWAFIAWLIYLGYLHLFSYKISTKKLQWYLALAFLV
LLISWFGVNYLPSAANSVHSYQQS

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30357; Mature: 30226

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGINFNTAAFLAIALWAGGSILHPLAQNKPALKRLAYILMLSGSAVMAGFIVIYWISLDR
CCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PPLRTLGETRMWYATMIPLVGFLVEYRWKIGWLKYYCMGLAGFFLGINLLHPEVFDKTLM
CCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
PALQSVWFIPHVIVYLVGYVLLAASSASAWHNVFLISRSKENKNYQHLSHYLALLGFVLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHH
TFGLVFGALWAKEAWGHYWTWDPKETWAFIAWLIYLGYLHLFSYKISTKKLQWYLALAFL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLISWFGVNYLPSAANSVHSYQQS
HHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
GINFNTAAFLAIALWAGGSILHPLAQNKPALKRLAYILMLSGSAVMAGFIVIYWISLDR
CCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PPLRTLGETRMWYATMIPLVGFLVEYRWKIGWLKYYCMGLAGFFLGINLLHPEVFDKTLM
CCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
PALQSVWFIPHVIVYLVGYVLLAASSASAWHNVFLISRSKENKNYQHLSHYLALLGFVLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHH
TFGLVFGALWAKEAWGHYWTWDPKETWAFIAWLIYLGYLHLFSYKISTKKLQWYLALAFL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLISWFGVNYLPSAANSVHSYQQS
HHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA