| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357570
Identifier: 119357570
GI number: 119357570
Start: 2015091
End: 2016494
Strand: Reverse
Name: 119357570
Synonym: Cpha266_1773
Alternate gene names: NA
Gene position: 2016494-2015091 (Counterclockwise)
Preceding gene: 119357571
Following gene: 119357569
Centisome position: 64.34
GC content: 48.86
Gene sequence:
>1404_bases ATGCCGATGTATGCATCTCTCAGCATTGGAAAAAATGATTCCGATGAGATAAAAGCCTGGAAAAAAAGAACGGCCGACCG CTTGCTTTCGCTTCGCAAGGCGCTTCATGAGCATCTTGCGGTTTCGTCCTCCGATGCTCAACGCAGGCAGCAATGGCTTC GTCTTGCCACATGGAACATCAGGGAGTTTGACTCTGCCAAATATGGCGGGCGCAGCAGGGAGGCTCTTTTTTTTATTGCC GAAATTATATCTCATTTCGATCTCGTCGCGCTTCAGGAGGTGCGTCAGGACCTTAAAACCCTGAAGGTTGTCATGGGCAT TCTCGGCAATAACGACTGGGATTATATTGCCACAGATATTACAACTGGCGATTCGGGAAACGGAGAGCGGATGGTTTTTG TCTACAACAAGCGGATGGTGGGTTTTACCGGTATTGCCGGCGAGGTGGTGCTTGAACAGGAAGAGGAGATTGCTGACGCT CTTGACCGTTGTTTTATGGATAGCGCAGGATTGAAGCTTGAACTTCCTCTCGGTACACGGTTGGAACAGTCGGAGCTTGT TGCGTTAAGAAAATATCGGGGAAAGTTATTGCTCAAAGAGAACCTTCAACTGCCGCTTCCATTCGGAACGAAGGTCGTTC TCCCGGCAGGCAGTTCGCTTGTACTCAAAGAGGGTACCGAAGTAGCTGTATCGAATGAAGGCAACGTACTTCTTGATACG ACAGCAATGCCGATTTGCGGGAAGGATGCTTTTGTCCAGTTGGACCCGAAAGCACTGACAAAGGGAAAACTTCAGTTTGC TCGTTCTCCCTTTCTGGTGACCTTCAGGTCGGGTTGGCTGAAACTCATGCTCTGTACGGTTCATATTTATTACGGTAGCG GCAACGTGGGTGTAAAGCGGCGAAACGAAGAGATAAAAAAACTGACAGCGTTTCTCTCACGCCGCGCAATGGCAGAACAT GACTCTGACGCTGAGAATTTTTTCTTTCTGCTTGGTGATTTCAATATTATCGGGAAAAAACATGTAACCTGGCAATCGCT GCACAGCAACGGGTTCAAGGTGCCTGAACAGCTTGCCGAAATTCCTGAGGGCAGCAATGTTGAGCGCGACAAGGCCTATG ATCAAATTGCCTATTGGGAGGGCGTGGAGCAAGGAAAGCGTGGTTCGACGGCAGTCGATGTGGGCAATGCCGGTATCTTT GATTATTACAAGGAGGTGTTTCGTGAGGGAAGCGATGACCCTGGTGGGGAAGACGAGCGGTACTATACCGGAAAAATAAA AAACCCGAAGGTGAGTTATCGTGAGTGGCGAACCTATCAGATGTCCGATCATCTGCCTATGTGGCTTGAGCTCAGAACCG ATTTTGGAAATGATTACCTTGACGGAATTGTTTCGGAAACGTGA
Upstream 100 bases:
>100_bases GCGTCTCGGTTTGGAAAGACCATGGGCTGTATAGATTATAACAGACGAGGAGAGAATGGATTGAATCGATCATTGTCAAC CAAAAACGGAGGATCATGCC
Downstream 100 bases:
>100_bases TGGCAGTTTTTCTCCAGACCATTGCGTTGAAGTGCAGAGCTGTATCGCTGTAATTGTAAACAAAGGAGGGATCAATGGAA CTTGAATTTTACGGCGCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase; Endonuclease/Exonuclease/Phosphatase Family
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MPMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNIREFDSAKYGGRSREALFFIA EIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDITTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADA LDRCFMDSAGLKLELPLGTRLEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKRRNEEIKKLTAFLSRRAMAEH DSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAEIPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIF DYYKEVFREGSDDPGGEDERYYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET
Sequences:
>Translated_467_residues MPMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNIREFDSAKYGGRSREALFFIA EIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDITTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADA LDRCFMDSAGLKLELPLGTRLEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKRRNEEIKKLTAFLSRRAMAEH DSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAEIPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIF DYYKEVFREGSDDPGGEDERYYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET >Mature_466_residues PMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNIREFDSAKYGGRSREALFFIAE IISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDITTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADAL DRCFMDSAGLKLELPLGTRLEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDTT AMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKRRNEEIKKLTAFLSRRAMAEHD SDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAEIPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIFD YYKEVFREGSDDPGGEDERYYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52801; Mature: 52669
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNI CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC REFDSAKYGGRSREALFFIAEIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE TTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADALDRCFMDSAGLKLELPLGTR ECCCCCCCCEEEEEECCCEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCC LEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT CCHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCEEEEE TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKR CCCCCCCCCCEEEECHHHHCCCHHHHCCCCEEEEEHHHHHHEEEEEEEEEECCCCCCEEC RNEEIKKLTAFLSRRAMAEHDSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAE CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCCCHHHHHCCCCCCCHHHHC IPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIFDYYKEVFREGSDDPGGEDER CCCCCCCCHHHHHHHHHHHHCHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC YYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET EEECCCCCCCCCHHHCEEEECCCCCCEEEEEECCCCCHHHHHHHCCC >Mature Secondary Structure PMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNI CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC REFDSAKYGGRSREALFFIAEIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE TTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADALDRCFMDSAGLKLELPLGTR ECCCCCCCCEEEEEECCCEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCC LEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT CCHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCEEEEE TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKR CCCCCCCCCCEEEECHHHHCCCHHHHCCCCEEEEEHHHHHHEEEEEEEEEECCCCCCEEC RNEEIKKLTAFLSRRAMAEHDSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAE CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCCCHHHHHCCCCCCCHHHHC IPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIFDYYKEVFREGSDDPGGEDER CCCCCCCCHHHHHHHHHHHHCHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC YYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET EEECCCCCCCCCHHHCEEEECCCCCCEEEEEECCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA