Definition Chlorobium phaeobacteroides DSM 266 chromosome, complete genome.
Accession NC_008639
Length 3,133,902

Click here to switch to the map view.

The map label for this gene is 119357570

Identifier: 119357570

GI number: 119357570

Start: 2015091

End: 2016494

Strand: Reverse

Name: 119357570

Synonym: Cpha266_1773

Alternate gene names: NA

Gene position: 2016494-2015091 (Counterclockwise)

Preceding gene: 119357571

Following gene: 119357569

Centisome position: 64.34

GC content: 48.86

Gene sequence:

>1404_bases
ATGCCGATGTATGCATCTCTCAGCATTGGAAAAAATGATTCCGATGAGATAAAAGCCTGGAAAAAAAGAACGGCCGACCG
CTTGCTTTCGCTTCGCAAGGCGCTTCATGAGCATCTTGCGGTTTCGTCCTCCGATGCTCAACGCAGGCAGCAATGGCTTC
GTCTTGCCACATGGAACATCAGGGAGTTTGACTCTGCCAAATATGGCGGGCGCAGCAGGGAGGCTCTTTTTTTTATTGCC
GAAATTATATCTCATTTCGATCTCGTCGCGCTTCAGGAGGTGCGTCAGGACCTTAAAACCCTGAAGGTTGTCATGGGCAT
TCTCGGCAATAACGACTGGGATTATATTGCCACAGATATTACAACTGGCGATTCGGGAAACGGAGAGCGGATGGTTTTTG
TCTACAACAAGCGGATGGTGGGTTTTACCGGTATTGCCGGCGAGGTGGTGCTTGAACAGGAAGAGGAGATTGCTGACGCT
CTTGACCGTTGTTTTATGGATAGCGCAGGATTGAAGCTTGAACTTCCTCTCGGTACACGGTTGGAACAGTCGGAGCTTGT
TGCGTTAAGAAAATATCGGGGAAAGTTATTGCTCAAAGAGAACCTTCAACTGCCGCTTCCATTCGGAACGAAGGTCGTTC
TCCCGGCAGGCAGTTCGCTTGTACTCAAAGAGGGTACCGAAGTAGCTGTATCGAATGAAGGCAACGTACTTCTTGATACG
ACAGCAATGCCGATTTGCGGGAAGGATGCTTTTGTCCAGTTGGACCCGAAAGCACTGACAAAGGGAAAACTTCAGTTTGC
TCGTTCTCCCTTTCTGGTGACCTTCAGGTCGGGTTGGCTGAAACTCATGCTCTGTACGGTTCATATTTATTACGGTAGCG
GCAACGTGGGTGTAAAGCGGCGAAACGAAGAGATAAAAAAACTGACAGCGTTTCTCTCACGCCGCGCAATGGCAGAACAT
GACTCTGACGCTGAGAATTTTTTCTTTCTGCTTGGTGATTTCAATATTATCGGGAAAAAACATGTAACCTGGCAATCGCT
GCACAGCAACGGGTTCAAGGTGCCTGAACAGCTTGCCGAAATTCCTGAGGGCAGCAATGTTGAGCGCGACAAGGCCTATG
ATCAAATTGCCTATTGGGAGGGCGTGGAGCAAGGAAAGCGTGGTTCGACGGCAGTCGATGTGGGCAATGCCGGTATCTTT
GATTATTACAAGGAGGTGTTTCGTGAGGGAAGCGATGACCCTGGTGGGGAAGACGAGCGGTACTATACCGGAAAAATAAA
AAACCCGAAGGTGAGTTATCGTGAGTGGCGAACCTATCAGATGTCCGATCATCTGCCTATGTGGCTTGAGCTCAGAACCG
ATTTTGGAAATGATTACCTTGACGGAATTGTTTCGGAAACGTGA

Upstream 100 bases:

>100_bases
GCGTCTCGGTTTGGAAAGACCATGGGCTGTATAGATTATAACAGACGAGGAGAGAATGGATTGAATCGATCATTGTCAAC
CAAAAACGGAGGATCATGCC

Downstream 100 bases:

>100_bases
TGGCAGTTTTTCTCCAGACCATTGCGTTGAAGTGCAGAGCTGTATCGCTGTAATTGTAAACAAAGGAGGGATCAATGGAA
CTTGAATTTTACGGCGCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase; Endonuclease/Exonuclease/Phosphatase Family

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MPMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNIREFDSAKYGGRSREALFFIA
EIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDITTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADA
LDRCFMDSAGLKLELPLGTRLEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT
TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKRRNEEIKKLTAFLSRRAMAEH
DSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAEIPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIF
DYYKEVFREGSDDPGGEDERYYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET

Sequences:

>Translated_467_residues
MPMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNIREFDSAKYGGRSREALFFIA
EIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDITTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADA
LDRCFMDSAGLKLELPLGTRLEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT
TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKRRNEEIKKLTAFLSRRAMAEH
DSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAEIPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIF
DYYKEVFREGSDDPGGEDERYYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET
>Mature_466_residues
PMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNIREFDSAKYGGRSREALFFIAE
IISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDITTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADAL
DRCFMDSAGLKLELPLGTRLEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDTT
AMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKRRNEEIKKLTAFLSRRAMAEHD
SDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAEIPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIFD
YYKEVFREGSDDPGGEDERYYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52801; Mature: 52669

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNI
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
REFDSAKYGGRSREALFFIAEIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDI
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
TTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADALDRCFMDSAGLKLELPLGTR
ECCCCCCCCEEEEEECCCEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCC
LEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT
CCHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCEEEEE
TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKR
CCCCCCCCCCEEEECHHHHCCCHHHHCCCCEEEEEHHHHHHEEEEEEEEEECCCCCCEEC
RNEEIKKLTAFLSRRAMAEHDSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAE
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCCCHHHHHCCCCCCCHHHHC
IPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIFDYYKEVFREGSDDPGGEDER
CCCCCCCCHHHHHHHHHHHHCHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
YYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET
EEECCCCCCCCCHHHCEEEECCCCCCEEEEEECCCCCHHHHHHHCCC
>Mature Secondary Structure 
PMYASLSIGKNDSDEIKAWKKRTADRLLSLRKALHEHLAVSSSDAQRRQQWLRLATWNI
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
REFDSAKYGGRSREALFFIAEIISHFDLVALQEVRQDLKTLKVVMGILGNNDWDYIATDI
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
TTGDSGNGERMVFVYNKRMVGFTGIAGEVVLEQEEEIADALDRCFMDSAGLKLELPLGTR
ECCCCCCCCEEEEEECCCEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCC
LEQSELVALRKYRGKLLLKENLQLPLPFGTKVVLPAGSSLVLKEGTEVAVSNEGNVLLDT
CCHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCEEEEE
TAMPICGKDAFVQLDPKALTKGKLQFARSPFLVTFRSGWLKLMLCTVHIYYGSGNVGVKR
CCCCCCCCCCEEEECHHHHCCCHHHHCCCCEEEEEHHHHHHEEEEEEEEEECCCCCCEEC
RNEEIKKLTAFLSRRAMAEHDSDAENFFFLLGDFNIIGKKHVTWQSLHSNGFKVPEQLAE
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCCCHHHHHCCCCCCCHHHHC
IPEGSNVERDKAYDQIAYWEGVEQGKRGSTAVDVGNAGIFDYYKEVFREGSDDPGGEDER
CCCCCCCCHHHHHHHHHHHHCHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
YYTGKIKNPKVSYREWRTYQMSDHLPMWLELRTDFGNDYLDGIVSET
EEECCCCCCCCCHHHCEEEECCCCCCEEEEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA