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The map label for this gene is rbn [C]

Identifier: 119357454

GI number: 119357454

Start: 1881332

End: 1882681

Strand: Reverse

Name: rbn [C]

Synonym: Cpha266_1653

Alternate gene names: 119357454

Gene position: 1882681-1881332 (Counterclockwise)

Preceding gene: 119357455

Following gene: 119357453

Centisome position: 60.07

GC content: 44.81

Gene sequence:

>1350_bases
ATGTTTGAAGGCATTGGAGGTGAGACGTTATGGCGCAAAGAGAAACAGCGCCCGGTCAAGGAACTCATCGATTTTCATAT
GGATTGGTTGCATAAAAAAAACGAACATGACGAATGGCTGAGTGATCGGGATGGTGAGCTCTATATTCGTGTTTTTTTTC
CTTTTTTCTGGAAAAATTTCATTCATGACAAGATATTTCTCAGTGCGGGTTCGCTTGCTTTTCAGTCTCTTCTTTCTCTT
GTACCGCTTCTTTCTGTTACGCTTTCCATTCTCAGGGTTTTTCCGGTATTCGAATCGCTTAACCGGTATCTTGAGGATTA
CGTCTTGCAGAACTTTATACCCGGTACCGGTACCATGTTGAGAGAGTATCTCAATGCGTTTATCGATAAAACATCGAGTG
TTCCGCTTCTTGGCGTTGTTTTTCTTTTCATTATCGCCCTGTCCCTTATTTCAACCATTGACCATACGCTCAATGAGATA
TGGGAGGTTTACGCTCCGCGTAAAATTGTTCAGGGGTTCACGCTTTACTGGACGGTACTCACTCTTGGTCCTGTGCTGAT
CGGCAGCAGTCTCGTTGCCAGTTCTTTCGTCTGGTATACGGTGTTTACCGAAGGCCCGCTCCTTGAATTGAAAACCCGTC
TGCTCTCTTTTCTTCCGTTTCTGAATTCTGTCATTGCATTTTTTCTGCTCTACATGCTGGTGCCGAACCGAAGGGTCAGG
TTTTATCATGCCGTGTATGGATCGTTGCTTGCCGCTGTTCTTTTTGAGCTTTCCAAGAAATGGTTTGTTTTTTATGTCAG
CCACTTTGCTACATTTGAATATATCTACGGGGCGCTCTCGGTTATTCCAATGCTTTTTTTCTGGATCTATCTTGAGTGGG
TTGTGGTGCTTACCGGAGCGGAATTTGTTTTTTGTCTTGGATCGTTGAAACCGAAGAAATCCATTTCCGAACCATTCGAT
CCGATGCGCGGAATCGATGAGATTCTGGTGGTTCTCGGCTGGATATGGGAAGGTCAGAAAACGGGAACTCCGTTAAGCAT
GAAGAGCATCATGAAAAAAAAACGGGCACTCCAGCCGTCGAGAGCCAGAAGTATTGTCGATCTTCTGTTGCAAGCAGGAA
TTGTTCATGGTACGGCAAACGCAGGGTTTGCTGTCAGCAGTGATCTTTACGAGACGACACTGTTTGATCTTTATACAAAA
ATTCCCGGCGGTTTTGGTGCTAATGAGAGTGAAACCCGAGGAAATGGCGGCGCGATATTGCCAGAGAGTATCGGTCATAA
TGTTACAGCAGGGATAAAAAGCGCAATGACTATTCCGCTTGCTACCGTGTTGCAGGATAAAATCTATTGA

Upstream 100 bases:

>100_bases
GAAGCCAGAAGGCCGCCCTTGCTTCGCTTCTTGTCTTTTTTTCGCTTGGACTTTTTCTGATGACGAGGGTCAGGTCAGTA
AGTACAGCCCCTCATCGTTG

Downstream 100 bases:

>100_bases
AGTCATGAGTTATCAGGTTATAGCAAGAAAGTACCGTCCTAAAAAATTTGCCGACATTACGGCGCAGGAACATATAACCC
GGACTATTCAGAATTCGCTT

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MFEGIGGETLWRKEKQRPVKELIDFHMDWLHKKNEHDEWLSDRDGELYIRVFFPFFWKNFIHDKIFLSAGSLAFQSLLSL
VPLLSVTLSILRVFPVFESLNRYLEDYVLQNFIPGTGTMLREYLNAFIDKTSSVPLLGVVFLFIIALSLISTIDHTLNEI
WEVYAPRKIVQGFTLYWTVLTLGPVLIGSSLVASSFVWYTVFTEGPLLELKTRLLSFLPFLNSVIAFFLLYMLVPNRRVR
FYHAVYGSLLAAVLFELSKKWFVFYVSHFATFEYIYGALSVIPMLFFWIYLEWVVVLTGAEFVFCLGSLKPKKSISEPFD
PMRGIDEILVVLGWIWEGQKTGTPLSMKSIMKKKRALQPSRARSIVDLLLQAGIVHGTANAGFAVSSDLYETTLFDLYTK
IPGGFGANESETRGNGGAILPESIGHNVTAGIKSAMTIPLATVLQDKIY

Sequences:

>Translated_449_residues
MFEGIGGETLWRKEKQRPVKELIDFHMDWLHKKNEHDEWLSDRDGELYIRVFFPFFWKNFIHDKIFLSAGSLAFQSLLSL
VPLLSVTLSILRVFPVFESLNRYLEDYVLQNFIPGTGTMLREYLNAFIDKTSSVPLLGVVFLFIIALSLISTIDHTLNEI
WEVYAPRKIVQGFTLYWTVLTLGPVLIGSSLVASSFVWYTVFTEGPLLELKTRLLSFLPFLNSVIAFFLLYMLVPNRRVR
FYHAVYGSLLAAVLFELSKKWFVFYVSHFATFEYIYGALSVIPMLFFWIYLEWVVVLTGAEFVFCLGSLKPKKSISEPFD
PMRGIDEILVVLGWIWEGQKTGTPLSMKSIMKKKRALQPSRARSIVDLLLQAGIVHGTANAGFAVSSDLYETTLFDLYTK
IPGGFGANESETRGNGGAILPESIGHNVTAGIKSAMTIPLATVLQDKIY
>Mature_449_residues
MFEGIGGETLWRKEKQRPVKELIDFHMDWLHKKNEHDEWLSDRDGELYIRVFFPFFWKNFIHDKIFLSAGSLAFQSLLSL
VPLLSVTLSILRVFPVFESLNRYLEDYVLQNFIPGTGTMLREYLNAFIDKTSSVPLLGVVFLFIIALSLISTIDHTLNEI
WEVYAPRKIVQGFTLYWTVLTLGPVLIGSSLVASSFVWYTVFTEGPLLELKTRLLSFLPFLNSVIAFFLLYMLVPNRRVR
FYHAVYGSLLAAVLFELSKKWFVFYVSHFATFEYIYGALSVIPMLFFWIYLEWVVVLTGAEFVFCLGSLKPKKSISEPFD
PMRGIDEILVVLGWIWEGQKTGTPLSMKSIMKKKRALQPSRARSIVDLLLQAGIVHGTANAGFAVSSDLYETTLFDLYTK
IPGGFGANESETRGNGGAILPESIGHNVTAGIKSAMTIPLATVLQDKIY

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=263, Percent_Identity=37.6425855513308, Blast_Score=187, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1653_CHLPD (A1BGZ7)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_912098.1
- STRING:   A1BGZ7
- GeneID:   4571033
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_1653
- NMPDR:   fig|290317.7.peg.1734
- HOGENOM:   HBG405288
- OMA:   FELSKKW
- ProtClustDB:   CLSK571629
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 51019; Mature: 51019

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x10d36318)-; HASH(0x114d996c)-; HASH(0x11991a54)-; HASH(0xf8782b8)-; HASH(0x1164695c)-; HASH(0x10749204)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEGIGGETLWRKEKQRPVKELIDFHMDWLHKKNEHDEWLSDRDGELYIRVFFPFFWKNF
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEHHHHHHHHH
IHDKIFLSAGSLAFQSLLSLVPLLSVTLSILRVFPVFESLNRYLEDYVLQNFIPGTGTML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
REYLNAFIDKTSSVPLLGVVFLFIIALSLISTIDHTLNEIWEVYAPRKIVQGFTLYWTVL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TLGPVLIGSSLVASSFVWYTVFTEGPLLELKTRLLSFLPFLNSVIAFFLLYMLVPNRRVR
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
FYHAVYGSLLAAVLFELSKKWFVFYVSHFATFEYIYGALSVIPMLFFWIYLEWVVVLTGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFVFCLGSLKPKKSISEPFDPMRGIDEILVVLGWIWEGQKTGTPLSMKSIMKKKRALQPS
HHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCH
RARSIVDLLLQAGIVHGTANAGFAVSSDLYETTLFDLYTKIPGGFGANESETRGNGGAIL
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PESIGHNVTAGIKSAMTIPLATVLQDKIY
CHHHCCCHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure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CHHHCCCHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA