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The map label for this gene is rarA [H]

Identifier: 119356781

GI number: 119356781

Start: 1095218

End: 1096558

Strand: Direct

Name: rarA [H]

Synonym: Cpha266_0953

Alternate gene names: 119356781

Gene position: 1095218-1096558 (Clockwise)

Preceding gene: 119356780

Following gene: 119356782

Centisome position: 34.95

GC content: 52.57

Gene sequence:

>1341_bases
ATGGCTGATTCCGAACCTGTTCAGTCCGATCTTTTCGGCTTTTCGGCTTCCAGCGGGAGTGGTGAGCGTTTTCGCCCTCT
TGCTGAGCGCATGAGGCCCCGAACGCTCGATGACATTATGGGTCAGGATCATCTTGTGGGCAGGGATGCTCCTTTACGCA
GGTTTCTGGCAAGCGGCCAGTTTCCTTCGATGATTTTCTGGGGGCCTCCCGGTTCCGGAAAAACAACACTTGCCGGTATT
TGCGCTTCTTCGCTGCAGTTCGGGTTTGAAAAACTTTCCGCAATTGATTCCGGAGTGAAGGAGGTCAGAAAGGCGCTTGA
AAACGCTGAAAAAGCAAGACGGCGGGGTGTGCGCACCATGTTGTTTATTGACGAGATTCACCGTTTCAACAAAGCTCAGC
AGGATACGCTGCTTCATGCCATTGAAGAGGGACTTGTTGTGCTTGTCGGCGCTACAACTGAAAACCCTTCGTTCGAGGTC
AATGCTGCACTTCTCAGCAGAGCGCAGGTCTATATTCTCAATCCTCTTGGTGACAGGGAGATCGAGGCTGTGATCAATCA
CGCGCTGACAAGCGACACGGTTCTCTCTGCTCTTTCTGTTGTTCTTGAGGATCCGGATTTTCTTGTGCGTTTTTCAGCAG
GCGACGCCCGCAAGGCTCTGAATGCGCTTGAGGCGGCTATTGCTCTCGTTTCCGAATGCGGCCAGAAAAGCGTTGTTCTC
ACAAGAAAGATTTTTGAACAGGCTTTGCAGTACCGGGCGCCTGTTTATGACAAGGGTGGCGAGGTTCATTATGATACCGT
ATCGGCTTTTATCAAGTCTATGCGTGGTTCCGATCCTGATGCGGCGCTTTTCTGGCTGGCAAGAATGATAGAGGGTGGAG
AGGACCCGAAGTTTATCGCGCGGAGGATGGTTATTTTTGCCAGCGAGGATGTCGGTAATGCCGATCCCTATGCCTTGACC
CTTGCGGTTTCGGTTTTTCATGCGGTGGAACTGATCGGGATGCCCGAGGCGCGGATCAATCTTGCGCAGGGAGTTACCTA
TCTTGCAGGAGCTCCCAAATCGAATGCGAGTTATCAGGCTATGAATGCGGCTTTGAGTGAATCACCATCACTCCGGAGTT
TTCCTGTGCCGATGCAGCTTCGCAACGCTCCGACGAAATTTATGAAAAATCTTGGCTATGGCGGCGGTTACCGTTATCCT
CACGATTACCCCGGGCATTTTGTCGAGGAGAGCTATTTTCCGGAAGGGGTTGAGCCGAGGATCTATTACCATCCCGGAGA
TGAAGGGCGTGAGCGGTTCATCAGGGAGCGCCTTGCGGGGTTGTGGCAGGGGCGATACTGA

Upstream 100 bases:

>100_bases
TCTCGGCAAGTATGTTGCCCGGCAGCTTGGAACTGTTGCGCGCTCCCTGGAAGCAGATTCATTAATGGATGAGGCATGGC
TCAGGGAACAGGGGTTTTAA

Downstream 100 bases:

>100_bases
TCATGATCTTTCGTATGTTTTCAGCTCTTTGTATATTAAGCCCGTTGTCCGGGCAGGTGTATGTATGCCGGTATTTTATC
GGGACCCTCTCTGAATCGTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MADSEPVQSDLFGFSASSGSGERFRPLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQFPSMIFWGPPGSGKTTLAGI
CASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTMLFIDEIHRFNKAQQDTLLHAIEEGLVVLVGATTENPSFEV
NAALLSRAQVYILNPLGDREIEAVINHALTSDTVLSALSVVLEDPDFLVRFSAGDARKALNALEAAIALVSECGQKSVVL
TRKIFEQALQYRAPVYDKGGEVHYDTVSAFIKSMRGSDPDAALFWLARMIEGGEDPKFIARRMVIFASEDVGNADPYALT
LAVSVFHAVELIGMPEARINLAQGVTYLAGAPKSNASYQAMNAALSESPSLRSFPVPMQLRNAPTKFMKNLGYGGGYRYP
HDYPGHFVEESYFPEGVEPRIYYHPGDEGRERFIRERLAGLWQGRY

Sequences:

>Translated_446_residues
MADSEPVQSDLFGFSASSGSGERFRPLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQFPSMIFWGPPGSGKTTLAGI
CASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTMLFIDEIHRFNKAQQDTLLHAIEEGLVVLVGATTENPSFEV
NAALLSRAQVYILNPLGDREIEAVINHALTSDTVLSALSVVLEDPDFLVRFSAGDARKALNALEAAIALVSECGQKSVVL
TRKIFEQALQYRAPVYDKGGEVHYDTVSAFIKSMRGSDPDAALFWLARMIEGGEDPKFIARRMVIFASEDVGNADPYALT
LAVSVFHAVELIGMPEARINLAQGVTYLAGAPKSNASYQAMNAALSESPSLRSFPVPMQLRNAPTKFMKNLGYGGGYRYP
HDYPGHFVEESYFPEGVEPRIYYHPGDEGRERFIRERLAGLWQGRY
>Mature_445_residues
ADSEPVQSDLFGFSASSGSGERFRPLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQFPSMIFWGPPGSGKTTLAGIC
ASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTMLFIDEIHRFNKAQQDTLLHAIEEGLVVLVGATTENPSFEVN
AALLSRAQVYILNPLGDREIEAVINHALTSDTVLSALSVVLEDPDFLVRFSAGDARKALNALEAAIALVSECGQKSVVLT
RKIFEQALQYRAPVYDKGGEVHYDTVSAFIKSMRGSDPDAALFWLARMIEGGEDPKFIARRMVIFASEDVGNADPYALTL
AVSVFHAVELIGMPEARINLAQGVTYLAGAPKSNASYQAMNAALSESPSLRSFPVPMQLRNAPTKFMKNLGYGGGYRYPH
DYPGHFVEESYFPEGVEPRIYYHPGDEGRERFIRERLAGLWQGRY

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=432, Percent_Identity=45.3703703703704, Blast_Score=335, Evalue=5e-92,
Organism=Homo sapiens, GI18426904, Length=432, Percent_Identity=41.8981481481481, Blast_Score=288, Evalue=5e-78,
Organism=Homo sapiens, GI4506491, Length=241, Percent_Identity=27.3858921161826, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI31881687, Length=241, Percent_Identity=27.3858921161826, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI6677723, Length=222, Percent_Identity=25.2252252252252, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787119, Length=428, Percent_Identity=46.4953271028037, Blast_Score=369, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=40.521327014218, Blast_Score=300, Evalue=3e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=212, Percent_Identity=27.8301886792453, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921076, Length=251, Percent_Identity=25.0996015936255, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI18859927, Length=249, Percent_Identity=28.1124497991968, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49161; Mature: 49030

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSEPVQSDLFGFSASSGSGERFRPLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQ
CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCC
FPSMIFWGPPGSGKTTLAGICASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTM
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LFIDEIHRFNKAQQDTLLHAIEEGLVVLVGATTENPSFEVNAALLSRAQVYILNPLGDRE
HHHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCCCEEHHHHHCCCEEEEECCCCCHH
IEAVINHALTSDTVLSALSVVLEDPDFLVRFSAGDARKALNALEAAIALVSECGQKSVVL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHH
TRKIFEQALQYRAPVYDKGGEVHYDTVSAFIKSMRGSDPDAALFWLARMIEGGEDPKFIA
HHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHH
RRMVIFASEDVGNADPYALTLAVSVFHAVELIGMPEARINLAQGVTYLAGAPKSNASYQA
HHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCCCCHHHH
MNAALSESPSLRSFPVPMQLRNAPTKFMKNLGYGGGYRYPHDYPGHFVEESYFPEGVEPR
HHHHHHCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCE
IYYHPGDEGRERFIRERLAGLWQGRY
EEECCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADSEPVQSDLFGFSASSGSGERFRPLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQ
CCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCC
FPSMIFWGPPGSGKTTLAGICASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTM
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LFIDEIHRFNKAQQDTLLHAIEEGLVVLVGATTENPSFEVNAALLSRAQVYILNPLGDRE
HHHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCCCEEHHHHHCCCEEEEECCCCCHH
IEAVINHALTSDTVLSALSVVLEDPDFLVRFSAGDARKALNALEAAIALVSECGQKSVVL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHH
TRKIFEQALQYRAPVYDKGGEVHYDTVSAFIKSMRGSDPDAALFWLARMIEGGEDPKFIA
HHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHH
RRMVIFASEDVGNADPYALTLAVSVFHAVELIGMPEARINLAQGVTYLAGAPKSNASYQA
HHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCCCCHHHH
MNAALSESPSLRSFPVPMQLRNAPTKFMKNLGYGGGYRYPHDYPGHFVEESYFPEGVEPR
HHHHHHCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCE
IYYHPGDEGRERFIRERLAGLWQGRY
EEECCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]