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The map label for this gene is exbD [H]

Identifier: 119356688

GI number: 119356688

Start: 981892

End: 982311

Strand: Direct

Name: exbD [H]

Synonym: Cpha266_0857

Alternate gene names: 119356688

Gene position: 981892-982311 (Clockwise)

Preceding gene: 119356687

Following gene: 119356689

Centisome position: 31.33

GC content: 46.19

Gene sequence:

>420_bases
ATGCATTCAGGAAAAGGAAAGCTCTTGAGCGAGATTAACGTTACTCCCTTTATTGACGTTATGCTTGTGCTCCTGATTAT
TTTTATGGTAACGGCGCCGATGATGACGCATGGCGTGAAAGTCGATACACCGGAAACTACCCATGAAAGAATGGACATGG
ATCCTAAAGCGATTATTATCAGTATTGACAGTTCTGAAAGAGTATTTGTCAATAACTATCAGCTTGATGTCTCTGAAGTG
CGCGAACGACTCCCGGTGATTCTTGATGTCAAACAGACCGGCGAGGTCTATCTGAAGGCGGATAAATCACTGTCATACGG
TCTGGTTATGAATGTCATGGCCCAGATCAGGGAAGCGGGAATAGAAAAAATCGGCATGGTGACCGATCCGGCCCCTCTGC
CGGCGCAACGTTTGAAGTGA

Upstream 100 bases:

>100_bases
TCACTCAGCAGATCGCTCTCATCGATCGTGATCTTGAGGATTTTTCAGGTGAGTTTGTTACAGCATGTATCCGGAACATA
CAGAAAGGGTCTGTATCATG

Downstream 100 bases:

>100_bases
GTCACCCTGTATGAAAAAACGCAAGGAATATTCAAAAGAGAAAAAGATGTTTCTGTTGTGGCTTTCCGCAGCGGCTGCAA
TGCATATTCTTTTGCTATCC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MHSGKGKLLSEINVTPFIDVMLVLLIIFMVTAPMMTHGVKVDTPETTHERMDMDPKAIIISIDSSERVFVNNYQLDVSEV
RERLPVILDVKQTGEVYLKADKSLSYGLVMNVMAQIREAGIEKIGMVTDPAPLPAQRLK

Sequences:

>Translated_139_residues
MHSGKGKLLSEINVTPFIDVMLVLLIIFMVTAPMMTHGVKVDTPETTHERMDMDPKAIIISIDSSERVFVNNYQLDVSEV
RERLPVILDVKQTGEVYLKADKSLSYGLVMNVMAQIREAGIEKIGMVTDPAPLPAQRLK
>Mature_139_residues
MHSGKGKLLSEINVTPFIDVMLVLLIIFMVTAPMMTHGVKVDTPETTHERMDMDPKAIIISIDSSERVFVNNYQLDVSEV
RERLPVILDVKQTGEVYLKADKSLSYGLVMNVMAQIREAGIEKIGMVTDPAPLPAQRLK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=119, Percent_Identity=38.655462184874, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15525; Mature: 15525

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSGKGKLLSEINVTPFIDVMLVLLIIFMVTAPMMTHGVKVDTPETTHERMDMDPKAIII
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHCCCCCCEEEE
SIDSSERVFVNNYQLDVSEVRERLPVILDVKQTGEVYLKADKSLSYGLVMNVMAQIREAG
EECCCCEEEEECCEECHHHHHHHCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHC
IEKIGMVTDPAPLPAQRLK
HHHCCCCCCCCCCCHHHCC
>Mature Secondary Structure
MHSGKGKLLSEINVTPFIDVMLVLLIIFMVTAPMMTHGVKVDTPETTHERMDMDPKAIII
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHCCCCCCEEEE
SIDSSERVFVNNYQLDVSEVRERLPVILDVKQTGEVYLKADKSLSYGLVMNVMAQIREAG
EECCCCEEEEECCEECHHHHHHHCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHC
IEKIGMVTDPAPLPAQRLK
HHHCCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]