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The map label for this gene is smpB

Identifier: 119356646

GI number: 119356646

Start: 928494

End: 928967

Strand: Reverse

Name: smpB

Synonym: Cpha266_0815

Alternate gene names: 119356646

Gene position: 928967-928494 (Counterclockwise)

Preceding gene: 119356647

Following gene: 119356645

Centisome position: 29.64

GC content: 44.94

Gene sequence:

>474_bases
GTGTCAAAAAAACAACAGCCGCAAACCTTTGTGCAGGCGATCCATAATCGAAAAGCCCGCTTTGAATTTCATATTCTCGA
AACCATGGTGGCCGGTATCGAACTGCTTGGCAGCGAAGTAAAATCGGTTCGTCAGGGAAAGGCAAGCCTGAATGAAAGCT
ACGCCATGATCCATCACGGTGAGGTATGGCTGGAGAATATGCAGATTACCCCTTATGAGCACAACCATCTCGACACGCTT
GAAGCGAAGCGAAGCCGGAAACTGCTCCTTAACCGGGAGGAGATCAGAAAACTTGAAACAAAAATCAATGAGAAGGGATT
GACCCTGGTACCATTGAAAGCTTTTTTCAATAATCGCGGCATTCTGAAGATCGAAATTGCTCTGGCAAAAGGCAAAAAAC
TCTACGATAAACGCGAAACCATCAAATCAAGAGATGCTGAACGGCAACTGCAGCAACTGAAAAAAACCTATTAA

Upstream 100 bases:

>100_bases
ATGGCGACAATAAAAAAAAGTCTCGATCCCTTTCTGGTACTCAATATCGGAAATCTTATCCCGGTATCGTATCTGAAAAC
AGCAAACCATTGATAATAAG

Downstream 100 bases:

>100_bases
ACACTATAAAAACCCATGCGTTTTCCAATCCTCAAGGAACAGCTTGATATCATTACCGCCAATACCGTAGAAATCATCAG
CATCAATGAACTTGAACAGA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKKQQPQTFVQAIHNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHHGEVWLENMQITPYEHNHLDTL
EAKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNRGILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY

Sequences:

>Translated_157_residues
MSKKQQPQTFVQAIHNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHHGEVWLENMQITPYEHNHLDTL
EAKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNRGILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY
>Mature_156_residues
SKKQQPQTFVQAIHNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHHGEVWLENMQITPYEHNHLDTLE
AKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNRGILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=149, Percent_Identity=40.2684563758389, Blast_Score=100, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CHLPD (A1BEN9)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_911290.1
- ProteinModelPortal:   A1BEN9
- SMR:   A1BEN9
- STRING:   A1BEN9
- GeneID:   4570313
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_0815
- NMPDR:   fig|290317.7.peg.864
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18381; Mature: 18250

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKQQPQTFVQAIHNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHHG
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
EVWLENMQITPYEHNHLDTLEAKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNRG
CEEEECCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEHHHHHCCCC
ILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY
EEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKKQQPQTFVQAIHNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHHG
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
EVWLENMQITPYEHNHLDTLEAKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNRG
CEEEECCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEHHHHHCCCC
ILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY
EEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA