| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is trpH [H]
Identifier: 119356499
GI number: 119356499
Start: 757415
End: 758275
Strand: Reverse
Name: trpH [H]
Synonym: Cpha266_0664
Alternate gene names: 119356499
Gene position: 758275-757415 (Counterclockwise)
Preceding gene: 119356500
Following gene: 119356498
Centisome position: 24.2
GC content: 46.57
Gene sequence:
>861_bases ATGCCGTACAGCTTGTCAGGCGTAAGGCATAATGGCTTTGAAAAAGCAGATTTACATATACACACTAAATGTTCAGACGG GATCTTTACACCCGAGCAGATTATTGAAAAAGCTGCTGCGGTAGGGTTAAAGGCCATAAGCATTACTGATCATGACTCTG TTTTAGGTATTGACAAAGCAAAGCCATTAGCCTTGACAAAAGGCGTTGAGCTTATTCCCGGTGTAGAAATGAGCTCAACC TTCAAGGGATATGATATTCATGTCCTTGGTTATTTTTTCGATTATCAGCAATCAGAGCTGAAACAATATCTCGACCACTG CCGCCACCTCCGTACCGAGCGGGCAGAACGCATGGTGGGAAAACTTGCCAAAATGGGCGTTAAAATCGGGATCGAACAGA TCATCCTGAAAGCCCAGAACGGCAGTGTCGGCAGACCGCATATCGCTGCCGTCCTGCAGGATGGCGGATACGTGAAAAGT TTCAGCGAGGCTTTCAGCAAATACCTAGGCGCGCACAGCCCGGCGTACGTTAAAAGCATCGAAACACACCCAAGAGATGT CATCAGGCTTATCAACGAAGCCTCAGGATTGTCTTTTCTGGCACATCCGGCACATAACGTACCCGATGAAACCCTGAAAC AACTCATTACTTTCGGGCTTGACGGTATCGAAATCGTCCATCCGTCTCACGATCTATACAAACAGAACTACTACAGGGAA ATAGCCAATGAATATTTTCTGCTCTTTTCGGGGGGATCTGACTTTCATGGCATGAAAGAGCGGGATGATGACGCATTCGG CAACATAACCATCCCGTATGAGTGGGTTACAAAAATGAAAAGCCGTCTTGTCAAGACCTGA
Upstream 100 bases:
>100_bases GGCAACTTTTTACAGAAAAAAATAATTTTCTTTTCTCATACTATGACAGCGATTTTTTTTATATATATAAAATCAAAATA AACTAATTAACCATTCAGCC
Downstream 100 bases:
>100_bases ACAAGATGATGATTGGCCACGCAATAAAGATTGGTTATAATCCACCCAGCGCCTCAATCACGACATGAAGCGGTCGTATG AAAAAATGACATAAAGCCTT
Product: phosphotransferase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MPYSLSGVRHNGFEKADLHIHTKCSDGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKAKPLALTKGVELIPGVEMSST FKGYDIHVLGYFFDYQQSELKQYLDHCRHLRTERAERMVGKLAKMGVKIGIEQIILKAQNGSVGRPHIAAVLQDGGYVKS FSEAFSKYLGAHSPAYVKSIETHPRDVIRLINEASGLSFLAHPAHNVPDETLKQLITFGLDGIEIVHPSHDLYKQNYYRE IANEYFLLFSGGSDFHGMKERDDDAFGNITIPYEWVTKMKSRLVKT
Sequences:
>Translated_286_residues MPYSLSGVRHNGFEKADLHIHTKCSDGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKAKPLALTKGVELIPGVEMSST FKGYDIHVLGYFFDYQQSELKQYLDHCRHLRTERAERMVGKLAKMGVKIGIEQIILKAQNGSVGRPHIAAVLQDGGYVKS FSEAFSKYLGAHSPAYVKSIETHPRDVIRLINEASGLSFLAHPAHNVPDETLKQLITFGLDGIEIVHPSHDLYKQNYYRE IANEYFLLFSGGSDFHGMKERDDDAFGNITIPYEWVTKMKSRLVKT >Mature_285_residues PYSLSGVRHNGFEKADLHIHTKCSDGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKAKPLALTKGVELIPGVEMSSTF KGYDIHVLGYFFDYQQSELKQYLDHCRHLRTERAERMVGKLAKMGVKIGIEQIILKAQNGSVGRPHIAAVLQDGGYVKSF SEAFSKYLGAHSPAYVKSIETHPRDVIRLINEASGLSFLAHPAHNVPDETLKQLITFGLDGIEIVHPSHDLYKQNYYREI ANEYFLLFSGGSDFHGMKERDDDAFGNITIPYEWVTKMKSRLVKT
Specific function: Unknown
COG id: COG0613
COG function: function code R; Predicted metal-dependent phosphoesterases (PHP family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trpH family [H]
Homologues:
Organism=Escherichia coli, GI1787520, Length=247, Percent_Identity=30.3643724696356, Blast_Score=122, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: NA
Molecular weight: Translated: 31991; Mature: 31860
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: PS00239 RECEPTOR_TYR_KIN_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYSLSGVRHNGFEKADLHIHTKCSDGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKA CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCEEEEEECCCCCEEECCCC KPLALTKGVELIPGVEMSSTFKGYDIHVLGYFFDYQQSELKQYLDHCRHLRTERAERMVG CCCHHHCCCHHCCCCCCCCCCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHH KLAKMGVKIGIEQIILKAQNGSVGRPHIAAVLQDGGYVKSFSEAFSKYLGAHSPAYVKSI HHHHHHHHHCHHHHHEECCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHCCCCCHHHHHH ETHPRDVIRLINEASGLSFLAHPAHNVPDETLKQLITFGLDGIEIVHPSHDLYKQNYYRE HCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH IANEYFLLFSGGSDFHGMKERDDDAFGNITIPYEWVTKMKSRLVKT HHCCEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHCCC >Mature Secondary Structure PYSLSGVRHNGFEKADLHIHTKCSDGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKA CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCEEEEEECCCCCEEECCCC KPLALTKGVELIPGVEMSSTFKGYDIHVLGYFFDYQQSELKQYLDHCRHLRTERAERMVG CCCHHHCCCHHCCCCCCCCCCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHH KLAKMGVKIGIEQIILKAQNGSVGRPHIAAVLQDGGYVKSFSEAFSKYLGAHSPAYVKSI HHHHHHHHHCHHHHHEECCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHCCCCCHHHHHH ETHPRDVIRLINEASGLSFLAHPAHNVPDETLKQLITFGLDGIEIVHPSHDLYKQNYYRE HCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH IANEYFLLFSGGSDFHGMKERDDDAFGNITIPYEWVTKMKSRLVKT HHCCEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]