| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is trpD
Identifier: 119356420
GI number: 119356420
Start: 654284
End: 655339
Strand: Reverse
Name: trpD
Synonym: Cpha266_0584
Alternate gene names: 119356420
Gene position: 655339-654284 (Counterclockwise)
Preceding gene: 119356423
Following gene: 119356419
Centisome position: 20.91
GC content: 51.7
Gene sequence:
>1056_bases ATGCCTCAAAAGAAGTTACTCAACATGCTGATGGCAGGCAAAGACTTGGCCCGGGAAGAAATGACGCTCTGCATGAACAA TATCATGGATGGCGCATTTTCTGATATTGTCCTGGCAGCCCTGCTTGCCCTGCTGCAAAAAAAAGGCGTTACCGCTGATG AAGCAGCCGGAGCCTATGCAAGTATCATGGCACGAGCAACCCTCTGCAAACTTGATGAGGATGCCGTTGACACTTGCGGC ACGGGAGGCGATAATACCGGCACATTCAACATCTCCACCGCTGCGGCCATTATTGCCTGCGGAGCCGGTGTCAGCATAGC AAAACATGGCAACCGTTCGATGACCAGCCAATGCGGCAGCGCCGATGTGCTTGAAGCTCTTGGTTTCGCCATTGATCTGC CTCCGTCTGCAACCGAAGAACTCTTCAGACAAACCGGCTTTGCCTTTCTTTTCGCACCGATGTACCACCCTTCGATGAAA GCTGTTGCCCATGTACGAAGGGAGCTGGGCATCAGGACAATCTTTAATATGCTCGGACCTCTGCTCAACCCGGCTGGAGT AAAAAGGCAGCTTGTCGGCGTCTTTGAACCAGAGCTGATGGATCTCTACGGTACGGTTCTGCTGGCAACCGGATGTCGTC ACTCTCTGATTGTTCATGGTGAAACTGAAACCGGAGCAGCTTTCGATGAACCAAGCATCTCCGGCCCAACCCATATTCTG GAGCTGCACGAAGGCGTCATGGCGCGACATATCGTCCACCCAGAAGATTTCGGTTTCATCCGCTGCCCGATCGAGGATCT CGCTGGTGGCAATCGTGAAGAAAACGCCATCATTATCCGAAATATTCTCGACGGAAGCGCAACCCGGGCAAAAACCGAAG CTGCGCTCTACGCTGCTGCTATGACCTGTTATGTTTCAGGTAAAGCAAGCTGTATTGATGAGGGGGTATGCATGGCAAGT GATTCACTTGAAAGTGGACAAGCTTCATGCAAATTCACAGCAATCCTGCAGCTCAACAGAGAACTCTCCGGCAAGCATAA AGCACTGATCAACTAA
Upstream 100 bases:
>100_bases TCAGGGCATCGTAACGAGCCGCTTGAAAAACATCTGATTCTTGTTATTATTTACATTTACATTTACGAATATTCCTTTCA TTTGCCAACCATATAGTTCC
Downstream 100 bases:
>100_bases ACGCTTATATTTTTGCCGAAAAACTTGTATTATAGTTGCTTCATTTTCCAGTTGAAGCCGAGAAACATTGTATCATGAAC GGTCGCAACACCATCTATCC
Product: anthranilate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MPQKKLLNMLMAGKDLAREEMTLCMNNIMDGAFSDIVLAALLALLQKKGVTADEAAGAYASIMARATLCKLDEDAVDTCG TGGDNTGTFNISTAAAIIACGAGVSIAKHGNRSMTSQCGSADVLEALGFAIDLPPSATEELFRQTGFAFLFAPMYHPSMK AVAHVRRELGIRTIFNMLGPLLNPAGVKRQLVGVFEPELMDLYGTVLLATGCRHSLIVHGETETGAAFDEPSISGPTHIL ELHEGVMARHIVHPEDFGFIRCPIEDLAGGNREENAIIIRNILDGSATRAKTEAALYAAAMTCYVSGKASCIDEGVCMAS DSLESGQASCKFTAILQLNRELSGKHKALIN
Sequences:
>Translated_351_residues MPQKKLLNMLMAGKDLAREEMTLCMNNIMDGAFSDIVLAALLALLQKKGVTADEAAGAYASIMARATLCKLDEDAVDTCG TGGDNTGTFNISTAAAIIACGAGVSIAKHGNRSMTSQCGSADVLEALGFAIDLPPSATEELFRQTGFAFLFAPMYHPSMK AVAHVRRELGIRTIFNMLGPLLNPAGVKRQLVGVFEPELMDLYGTVLLATGCRHSLIVHGETETGAAFDEPSISGPTHIL ELHEGVMARHIVHPEDFGFIRCPIEDLAGGNREENAIIIRNILDGSATRAKTEAALYAAAMTCYVSGKASCIDEGVCMAS DSLESGQASCKFTAILQLNRELSGKHKALIN >Mature_350_residues PQKKLLNMLMAGKDLAREEMTLCMNNIMDGAFSDIVLAALLALLQKKGVTADEAAGAYASIMARATLCKLDEDAVDTCGT GGDNTGTFNISTAAAIIACGAGVSIAKHGNRSMTSQCGSADVLEALGFAIDLPPSATEELFRQTGFAFLFAPMYHPSMKA VAHVRRELGIRTIFNMLGPLLNPAGVKRQLVGVFEPELMDLYGTVLLATGCRHSLIVHGETETGAAFDEPSISGPTHILE LHEGVMARHIVHPEDFGFIRCPIEDLAGGNREENAIIIRNILDGSATRAKTEAALYAAAMTCYVSGKASCIDEGVCMASD SLESGQASCKFTAILQLNRELSGKHKALIN
Specific function: Tryptophan biosynthesis; first step. Tryptophan biosynthesis; second step. [C]
COG id: COG0547
COG function: function code E; Anthranilate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate phosphoribosyltransferase family
Homologues:
Organism=Escherichia coli, GI1787517, Length=333, Percent_Identity=33.6336336336336, Blast_Score=168, Evalue=4e-43, Organism=Saccharomyces cerevisiae, GI6320561, Length=346, Percent_Identity=29.1907514450867, Blast_Score=119, Evalue=7e-28,
Paralogues:
None
Copy number: 945 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 900 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): TRPD_CHLPD (A1BE13)
Other databases:
- EMBL: CP000492 - RefSeq: YP_911064.1 - ProteinModelPortal: A1BE13 - SMR: A1BE13 - STRING: A1BE13 - GeneID: 4569179 - GenomeReviews: CP000492_GR - KEGG: cph:Cpha266_0584 - NMPDR: fig|290317.7.peg.612 - eggNOG: COG0547 - HOGENOM: HBG559996 - OMA: LGVYSPE - ProtClustDB: PRK00188 - HAMAP: MF_00211 - InterPro: IPR005940 - InterPro: IPR000312 - InterPro: IPR017459 - InterPro: IPR020072 - Gene3D: G3DSA:1.20.970.10 - Gene3D: G3DSA:3.40.1030.10 - TIGRFAMs: TIGR01245
Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3; SSF47648 Glyco_trans_3; SSF52418 Glyco_trans_3
EC number: =2.4.2.18
Molecular weight: Translated: 37237; Mature: 37106
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQKKLLNMLMAGKDLAREEMTLCMNNIMDGAFSDIVLAALLALLQKKGVTADEAAGAYA CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH SIMARATLCKLDEDAVDTCGTGGDNTGTFNISTAAAIIACGAGVSIAKHGNRSMTSQCGS HHHHHHHHHHCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCEEHHCCCCHHHHHCCC ADVLEALGFAIDLPPSATEELFRQTGFAFLFAPMYHPSMKAVAHVRRELGIRTIFNMLGP HHHHHHHCCEEECCCCHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LLNPAGVKRQLVGVFEPELMDLYGTVLLATGCRHSLIVHGETETGAAFDEPSISGPTHIL HCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHH ELHEGVMARHIVHPEDFGFIRCPIEDLAGGNREENAIIIRNILDGSATRAKTEAALYAAA HHHHHHHHHHCCCCCCCCEEECCHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH MTCYVSGKASCIDEGVCMASDSLESGQASCKFTAILQLNRELSGKHKALIN HHHHCCCCHHHHHCCCEECCCCCCCCCCCEEEEHHHHHHHHHCCCHHHCCC >Mature Secondary Structure PQKKLLNMLMAGKDLAREEMTLCMNNIMDGAFSDIVLAALLALLQKKGVTADEAAGAYA CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH SIMARATLCKLDEDAVDTCGTGGDNTGTFNISTAAAIIACGAGVSIAKHGNRSMTSQCGS HHHHHHHHHHCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCEEHHCCCCHHHHHCCC ADVLEALGFAIDLPPSATEELFRQTGFAFLFAPMYHPSMKAVAHVRRELGIRTIFNMLGP HHHHHHHCCEEECCCCHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LLNPAGVKRQLVGVFEPELMDLYGTVLLATGCRHSLIVHGETETGAAFDEPSISGPTHIL HCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHH ELHEGVMARHIVHPEDFGFIRCPIEDLAGGNREENAIIIRNILDGSATRAKTEAALYAAA HHHHHHHHHHCCCCCCCCEEECCHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH MTCYVSGKASCIDEGVCMASDSLESGQASCKFTAILQLNRELSGKHKALIN HHHHCCCCHHHHHCCCEECCCCCCCCCCCEEEEHHHHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA